KEGG   PATHWAY: bpab00020
Entry
bpab00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brevibacillus parabrevis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpab00020  Citrate cycle (TCA cycle)
bpab00020

Module
bpab_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpab00020]
bpab_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpab00020]
bpab_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpab00020]
bpab_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpab00020]
bpab_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpab00020]
Other DBs
GO: 0006099
Organism
Brevibacillus parabrevis [GN:bpab]
Gene
PSE45_27430  mmgD; citrate synthase [KO:K01647] [EC:2.3.3.1]
PSE45_02580  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
PSE45_06805  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
PSE45_19720  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PSE45_06810  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PSE45_11710  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSE45_14865  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSE45_15610  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSE45_27530  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSE45_07365  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSE45_15985  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PSE45_15980  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PSE45_16495  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PSE45_16500  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PSE45_02220  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
PSE45_08420  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PSE45_08425  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PSE45_08415  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
PSE45_10625  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
PSE45_26935  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PSE45_26585  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PSE45_06815  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PSE45_27740  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PSE45_19090  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
PSE45_23155  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
PSE45_15625  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PSE45_15620  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
PSE45_14870  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
PSE45_15615  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
PSE45_27535  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpab00010  Glycolysis / Gluconeogenesis
bpab00053  Ascorbate and aldarate metabolism
bpab00061  Fatty acid biosynthesis
bpab00071  Fatty acid degradation
bpab00190  Oxidative phosphorylation
bpab00220  Arginine biosynthesis
bpab00250  Alanine, aspartate and glutamate metabolism
bpab00280  Valine, leucine and isoleucine degradation
bpab00350  Tyrosine metabolism
bpab00470  D-Amino acid metabolism
bpab00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system