KEGG   PATHWAY: brp00630
Entry
brp00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Brassica rapa (field mustard)
Class
Metabolism; Carbohydrate metabolism
Pathway map
brp00630  Glyoxylate and dicarboxylate metabolism
brp00630

Module
brp_M00012  Glyoxylate cycle [PATH:brp00630]
brp_M00532  Photorespiration [PATH:brp00630]
brp_M00621  Glycine cleavage system [PATH:brp00630]
Other DBs
GO: 0046487 0043648
Organism
Brassica rapa (field mustard) [GN:brp]
Gene
103869151  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
103859922  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
103864286  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [KO:K01895] [EC:6.2.1.1]
103869727  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
103850517  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
103844258  malate dehydrogenase 1, cytoplasmic [KO:K00025] [EC:1.1.1.37]
103836575  malate dehydrogenase 2, cytoplasmic [KO:K00025] [EC:1.1.1.37]
103839246  malate dehydrogenase 1, cytoplasmic [KO:K00025] [EC:1.1.1.37]
103845103  malate dehydrogenase 3, cytoplasmic [KO:K00025] [EC:1.1.1.37]
103847223  malate dehydrogenase 2, glyoxysomal [KO:K00026] [EC:1.1.1.37]
103872206  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
103873232  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
103871139  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
103832683  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
103850366  malate dehydrogenase 2, glyoxysomal [KO:K00026] [EC:1.1.1.37]
103864390  malate dehydrogenase 1, peroxisomal [KO:K00026] [EC:1.1.1.37]
103868444  malate dehydrogenase 1, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
103866666  citrate synthase 3, peroxisomal [KO:K01647] [EC:2.3.3.1]
103830182  citrate synthase 2, peroxisomal [KO:K01647] [EC:2.3.3.1]
103841749  citrate synthase 2, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
103841750  citrate synthase 2, peroxisomal [KO:K01647] [EC:2.3.3.1]
103866133  citrate synthase 4, mitochondrial [KO:K01647] [EC:2.3.3.1]
103862961  citrate synthase 2, peroxisomal [KO:K01647] [EC:2.3.3.1]
103858130  citrate synthase 4, mitochondrial isoform X2 [KO:K01647] [EC:2.3.3.1]
103862913  citrate synthase 5, mitochondrial [KO:K01647] [EC:2.3.3.1]
103873312  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
103834926  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
103834825  aconitate hydratase 2, mitochondrial [KO:K01681] [EC:4.2.1.3]
103871912  aconitate hydratase 3, mitochondrial [KO:K01681] [EC:4.2.1.3]
103860340  aconitate hydratase 3, mitochondrial [KO:K01681] [EC:4.2.1.3]
103854526  acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [KO:K00626] [EC:2.3.1.9]
103874937  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
103837242  acetyl-CoA acetyltransferase, cytosolic 1 isoform X2 [KO:K00626] [EC:2.3.1.9]
103839509  probable acetyl-CoA acetyltransferase, cytosolic 2 isoform X1 [KO:K00626] [EC:2.3.1.9]
103870027  (S)-2-hydroxy-acid oxidase GLO1-like isoform X2 [KO:K11517] [EC:1.1.3.15]
103870064  peroxisomal (S)-2-hydroxy-acid oxidase GLO3 isoform X2 [KO:K11517] [EC:1.1.3.15]
103842270  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X2 [KO:K11517] [EC:1.1.3.15]
103842047  (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
103856262  peroxisomal (S)-2-hydroxy-acid oxidase GLO5 [KO:K11517] [EC:1.1.3.15]
103842288  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
103859574  (S)-2-hydroxy-acid oxidase GLO2 isoform X1 [KO:K11517] [EC:1.1.3.15]
103860985  peroxisomal (S)-2-hydroxy-acid oxidase GLO5 [KO:K11517] [EC:1.1.3.15]
103859555  peroxisomal (S)-2-hydroxy-acid oxidase GLO3 isoform X2 [KO:K11517] [EC:1.1.3.15]
103859575  (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
103831878  catalase-2 isoform X1 [KO:K03781] [EC:1.11.1.6]
103829418  catalase-1 [KO:K03781] [EC:1.11.1.6]
103829420  catalase-3-like [KO:K03781] [EC:1.11.1.6]
103834369  catalase-2 [KO:K03781] [EC:1.11.1.6]
103835788  catalase-3 [KO:K03781] [EC:1.11.1.6]
103872849  catalase-3 isoform X1 [KO:K03781] [EC:1.11.1.6]
103872850  catalase-1 [KO:K03781] [EC:1.11.1.6]
103862389  catalase-2 [KO:K03781] [EC:1.11.1.6]
103871992  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
103830405  glyoxylate/hydroxypyruvate reductase A HPR2 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
103832507  glyoxylate/hydroxypyruvate reductase A HPR2 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
103843121  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
103828609  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
103872547  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
103830991  glycerate dehydrogenase HPR, peroxisomal [KO:K15893] [EC:1.1.1.29]
103831222  glycerate dehydrogenase HPR, peroxisomal [KO:K15893] [EC:1.1.1.29]
103839507  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
103849168  phosphoglycolate phosphatase 1A, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
41704059  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
117125990  ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
117129780  ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
103852369  ribulose bisphosphate carboxylase small chain 1A, chloroplastic [KO:K01602] [EC:4.1.1.39]
103852368  ribulose bisphosphate carboxylase small chain 1B, chloroplastic [KO:K01602] [EC:4.1.1.39]
103852372  ribulose bisphosphate carboxylase small chain 1B, chloroplastic [KO:K01602] [EC:4.1.1.39]
103864160  ribulose bisphosphate carboxylase small chain F1, chloroplastic [KO:K01602] [EC:4.1.1.39]
103850112  ribulose bisphosphate carboxylase small chain F1, chloroplastic [KO:K01602] [EC:4.1.1.39]
103863779  ribulose bisphosphate carboxylase small chain F1, chloroplastic isoform X2 [KO:K01602] [EC:4.1.1.39]
117133689  ribulose bisphosphate carboxylase small chain, chloroplastic isoform X1 [KO:K01602] [EC:4.1.1.39]
103863782  ribulose bisphosphate carboxylase small chain, chloroplastic-like isoform X1 [KO:K01602] [EC:4.1.1.39]
103837641  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
103860370  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
103829276  glutamate--glyoxylate aminotransferase 1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
103835672  glutamate--glyoxylate aminotransferase 1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
103831592  glutamate--glyoxylate aminotransferase 2 isoform X2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
103840779  glutamate--glyoxylate aminotransferase 1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
103865867  ferredoxin-dependent glutamate synthase 2, chloroplastic [KO:K00284] [EC:1.4.7.1]
103847326  ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial [KO:K00284] [EC:1.4.7.1]
103857972  LOW QUALITY PROTEIN: ferredoxin-dependent glutamate synthase 2, chloroplastic-like [KO:K00284] [EC:1.4.7.1]
103833698  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
103839002  glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
103852318  glutamine synthetase cytosolic isozyme 1-2 [KO:K01915] [EC:6.3.1.2]
103846320  glutamine synthetase cytosolic isozyme 1-4 isoform X1 [KO:K01915] [EC:6.3.1.2]
103851053  glutamine synthetase cytosolic isozyme 1-4 [KO:K01915] [EC:6.3.1.2]
103849205  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
103859729  glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
103863734  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
103869648  glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
103871469  glutamine synthetase cytosolic isozyme 1-5 [KO:K01915] [EC:6.3.1.2]
103850860  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
103856643  serine hydroxymethyltransferase 1, mitochondrial [KO:K00600] [EC:2.1.2.1]
103831657  serine hydroxymethyltransferase 2, mitochondrial [KO:K00600] [EC:2.1.2.1]
103830855  serine hydroxymethyltransferase 2, mitochondrial [KO:K00600] [EC:2.1.2.1]
103833148  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
103834557  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
103835714  serine hydroxymethyltransferase 6 [KO:K00600] [EC:2.1.2.1]
103833575  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
103835059  serine hydroxymethyltransferase 1, mitochondrial [KO:K00600] [EC:2.1.2.1]
103863581  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
103869084  serine hydroxymethyltransferase 6 [KO:K00600] [EC:2.1.2.1]
103850153  glycine dehydrogenase (decarboxylating) 1, mitochondrial [KO:K00281] [EC:1.4.4.2]
103843220  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
103836204  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
103869701  dihydrolipoyl dehydrogenase 2, mitochondrial [KO:K00382] [EC:1.8.1.4]
103870046  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
103871503  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
103859689  dihydrolipoyl dehydrogenase 1, chloroplastic isoform X1 [KO:K00382] [EC:1.8.1.4]
103860832  LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
103840158  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
103867390  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
103874749  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
103833647  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
103857558  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
103867370  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
103865433  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
103832491  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
103830434  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
103853260  D-glycerate 3-kinase, chloroplastic isoform X1 [KO:K15918] [EC:2.7.1.31]
103846458  formate dehydrogenase, chloroplastic/mitochondrial [KO:K00122] [EC:1.17.1.9]
103850951  formate dehydrogenase, chloroplastic/mitochondrial [KO:K00122] [EC:1.17.1.9]
103868219  formyltetrahydrofolate deformylase 2, mitochondrial [KO:K01433] [EC:3.5.1.10]
103827649  formyltetrahydrofolate deformylase 1, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
103858845  formamidase [KO:K01455] [EC:3.5.1.49]
103858933  formamidase [KO:K01455] [EC:3.5.1.49]
103873097  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
brp00010  Glycolysis / Gluconeogenesis
brp00020  Citrate cycle (TCA cycle)
brp00030  Pentose phosphate pathway
brp00053  Ascorbate and aldarate metabolism
brp00071  Fatty acid degradation
brp00230  Purine metabolism
brp00250  Alanine, aspartate and glutamate metabolism
brp00260  Glycine, serine and threonine metabolism
brp00620  Pyruvate metabolism
brp00710  Carbon fixation by Calvin cycle
brp00750  Vitamin B6 metabolism
brp00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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