KEGG   PATHWAY: bsei00630
Entry
bsei00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bradyrhizobium sediminis
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsei00630  Glyoxylate and dicarboxylate metabolism
bsei00630

Module
bsei_M00012  Glyoxylate cycle [PATH:bsei00630]
bsei_M00621  Glycine cleavage system [PATH:bsei00630]
bsei_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:bsei00630]
Other DBs
GO: 0046487 0043648
Organism
Bradyrhizobium sediminis [GN:bsei]
Gene
KMZ68_07460  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
KMZ68_01260  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
KMZ68_05545  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
KMZ68_07370  acsA; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
KMZ68_11390  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
KMZ68_23255  malate synthase G [KO:K01638] [EC:2.3.3.9]
KMZ68_01875  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KMZ68_25110  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
KMZ68_25115  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
KMZ68_14810  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KMZ68_01825  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KMZ68_22200  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
KMZ68_23945  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
KMZ68_25280  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
KMZ68_03835  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
KMZ68_07270  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
KMZ68_09480  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
KMZ68_11260  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
KMZ68_11330  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
KMZ68_16380  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
KMZ68_19365  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
KMZ68_25275  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
KMZ68_22255  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
KMZ68_14975  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
KMZ68_16225  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
KMZ68_16455  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
KMZ68_09995  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
KMZ68_10005  methylmalonyl-CoA mutase subunit beta [KO:K01847] [EC:5.4.99.2]
KMZ68_22195  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
KMZ68_22190  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
KMZ68_22185  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
KMZ68_00280  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
KMZ68_22810  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
KMZ68_05960  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
KMZ68_10710  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
KMZ68_16230  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
KMZ68_20330  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
KMZ68_20325  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
KMZ68_02330  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
KMZ68_19155  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
KMZ68_03415  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
KMZ68_12315  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
KMZ68_15200  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
KMZ68_17965  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
KMZ68_17955  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
KMZ68_01915  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KMZ68_14615  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KMZ68_17960  gcvH; glycine cleavage system protein GcvH [KO:K02437]
KMZ68_23715  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
KMZ68_08000  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
KMZ68_09395  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
KMZ68_11255  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
KMZ68_22870  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
KMZ68_06295  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
KMZ68_06290  NAD(P)H-dependent oxidoreductase subunit E [KO:K22515] [EC:1.17.1.9]
KMZ68_22875  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
KMZ68_22880  formate dehydrogenase subunit gamma [KO:K00127]
KMZ68_09385  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
KMZ68_19960  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
KMZ68_18825  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
KMZ68_08985  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
KMZ68_10320  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
KMZ68_10315  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bsei00010  Glycolysis / Gluconeogenesis
bsei00020  Citrate cycle (TCA cycle)
bsei00030  Pentose phosphate pathway
bsei00053  Ascorbate and aldarate metabolism
bsei00071  Fatty acid degradation
bsei00230  Purine metabolism
bsei00250  Alanine, aspartate and glutamate metabolism
bsei00260  Glycine, serine and threonine metabolism
bsei00620  Pyruvate metabolism
bsei00710  Carbon fixation by Calvin cycle
bsei00750  Vitamin B6 metabolism
bsei00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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