KEGG   PATHWAY: bsm00630
Entry
bsm00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bacillus smithii
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsm00630  Glyoxylate and dicarboxylate metabolism
bsm00630

Module
bsm_M00012  Glyoxylate cycle [PATH:bsm00630]
bsm_M00621  Glycine cleavage system [PATH:bsm00630]
Other DBs
GO: 0046487 0043648
Organism
Bacillus smithii [GN:bsm]
Gene
BSM4216_3411  Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
BSM4216_2895  Acyl-coenzyme A synthetases/AMP-fattyacid ligases YtcI-like [KO:K01895] [EC:6.2.1.1]
BSM4216_2909  Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
BSM4216_3412  Malate synthase [KO:K01638] [EC:2.3.3.9]
BSM4216_2849  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BSM4216_0639  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
BSM4216_2852  Citrate synthase [KO:K01647] [EC:2.3.3.1]
BSM4216_1945  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BSM4216_0389  Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BSM4216_3706  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
BSM4216_2113  Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BSM4216_0353  Glycolate dehydrogenase subunit GlcD [KO:K00104] [EC:1.1.99.14]
BSM4216_2161  FAD/FMN-containing dehydrogenase [KO:K00104] [EC:1.1.99.14]
BSM4216_0354  Glycolate dehydrogenase iron-sulfur subunit GlcF [KO:K11473] [EC:1.1.99.14]
BSM4216_2162  Glycolate dehydrogenase iron-sulfur subunit GlcF [KO:K11473] [EC:1.1.99.14]
BSM4216_1333  Catalase [KO:K03781] [EC:1.11.1.6]
BSM4216_1900  Hydroxypyruvate reductase [KO:K00015] [EC:1.1.1.26]
BSM4216_2011  Glutamine synthetase type I [KO:K01915] [EC:6.3.1.2]
BSM4216_3669  Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BSM4216_2536  Glycine dehydrogenase [KO:K00282] [EC:1.4.4.2]
BSM4216_2535  Glycine dehydrogenase [KO:K00283] [EC:1.4.4.2]
BSM4216_2537  Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
BSM4216_1418  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
BSM4216_0609  Dihydrolipoamide dehydrogenase of acetoin dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSM4216_2491  Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSM4216_3121  Glycine cleavage system H protein [KO:K02437]
BSM4216_3321  Glycerate kinase [KO:K00865] [EC:2.7.1.165]
BSM4216_3317  Tartrate decarboxylase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BSM4216_3794  Oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
BSM4216_1328  Formate dehydrogenase related protein [KO:K00123] [EC:1.17.1.9]
BSM4216_1742  Formate dehydrogenase related protein [KO:K00123] [EC:1.17.1.9]
BSM4216_2453  Metal-dependent hydrolase [KO:K07130] [EC:3.5.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bsm00010  Glycolysis / Gluconeogenesis
bsm00020  Citrate cycle (TCA cycle)
bsm00030  Pentose phosphate pathway
bsm00053  Ascorbate and aldarate metabolism
bsm00071  Fatty acid degradation
bsm00230  Purine metabolism
bsm00250  Alanine, aspartate and glutamate metabolism
bsm00260  Glycine, serine and threonine metabolism
bsm00620  Pyruvate metabolism
bsm00710  Carbon fixation by Calvin cycle
bsm00750  Vitamin B6 metabolism
bsm00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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