KEGG   PATHWAY: bste00020
Entry
bste00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacteroides stercoris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bste00020  Citrate cycle (TCA cycle)
bste00020

Module
bste_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bste00020]
bste_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bste00020]
bste_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bste00020]
Other DBs
GO: 0006099
Organism
Bacteroides stercoris [GN:bste]
Gene
K6V31_07415  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
K6V31_07425  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
K6V31_07420  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K6V31_10725  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K6V31_00320  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
K6V31_10015  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
K6V31_00315  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
K6V31_10020  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
K6V31_00310  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
K6V31_00325  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
K6V31_10380  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K6V31_10385  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K6V31_10375  succinate dehydrogenase/fumarate reductase cytochrome b subunit [KO:K00241]
K6V31_08665  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
K6V31_12380  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K6V31_14085  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K6V31_15575  oxaloacetate decarboxylase [KO:K01960] [EC:6.4.1.1]
K6V31_01550  oxaloacetate decarboxylase [KO:K01960] [EC:6.4.1.1]
K6V31_10045  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
K6V31_15215  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bste00010  Glycolysis / Gluconeogenesis
bste00061  Fatty acid biosynthesis
bste00071  Fatty acid degradation
bste00190  Oxidative phosphorylation
bste00220  Arginine biosynthesis
bste00250  Alanine, aspartate and glutamate metabolism
bste00280  Valine, leucine and isoleucine degradation
bste00350  Tyrosine metabolism
bste00470  D-Amino acid metabolism
bste00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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