KEGG   PATHWAY: buk00630
Entry
buk00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Burkholderia sp. KJ006
Class
Metabolism; Carbohydrate metabolism
Pathway map
buk00630  Glyoxylate and dicarboxylate metabolism
buk00630

Module
buk_M00012  Glyoxylate cycle [PATH:buk00630]
buk_M00621  Glycine cleavage system [PATH:buk00630]
Other DBs
GO: 0046487 0043648
Organism
Burkholderia sp. KJ006 [GN:buk]
Gene
MYA_1833  Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
MYA_4215  Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
MYA_1983  Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
MYA_2950  Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
MYA_5107  Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase [KO:K01895] [EC:6.2.1.1]
MYA_5963  Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
MYA_1837  Malate synthase [KO:K01638] [EC:2.3.3.9]
MYA_3473  Malate synthase G [KO:K01638] [EC:2.3.3.9]
MYA_4051  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MYA_3423  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MYA_4058  Citrate synthase [KO:K01647] [EC:2.3.3.1]
MYA_2297  hypothetical protein [KO:K01647] [EC:2.3.3.1]
MYA_4047  Aconitate hydratase/2-methylisocitrate dehydratase [KO:K01681] [EC:4.2.1.3]
MYA_5230  Aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MYA_1579  3-ketoacyl-CoA thiolase/Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
MYA_3697  3-ketoacyl-CoA thiolase/Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
MYA_5109  Acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
MYA_1705  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
MYA_2534  3-ketoacyl-CoA thiolase/Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
MYA_1578  Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
MYA_2533  Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
MYA_5688  Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
MYA_0641  Glycolate dehydrogenase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
MYA_0640  Glycolate dehydrogenase, FAD-binding subunit GlcE [KO:K11472] [EC:1.1.99.14]
MYA_5303  Catalase [KO:K03781] [EC:1.11.1.6]
MYA_0011  Catalase [KO:K03781] [EC:1.11.1.6]
MYA_2714  D-3-phosphoglycerate dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
MYA_5826  D-3-phosphoglycerate dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
MYA_0996  D-isomer specific 2-hydroxyacid dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
MYA_1538  2-ketogluconate 6-phosphate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
MYA_4984  Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
MYA_1006  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
MYA_0448  Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
MYA_4994  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
MYA_1933  Glutamine synthetase type I [KO:K01915] [EC:6.3.1.2]
MYA_1950  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
MYA_2747  Gamma-glutamyl-putrescine synthetase [KO:K01915] [EC:6.3.1.2]
MYA_3617  Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
MYA_0690  Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
MYA_3046  Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
MYA_0140  Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) [KO:K00281] [EC:1.4.4.2]
MYA_0142  Aminomethyltransferase (glycine cleavage system T protein) [KO:K00605] [EC:2.1.2.10]
MYA_1919  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
MYA_5036  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
MYA_1348  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
MYA_0141  Glycine cleavage system H protein [KO:K02437]
MYA_1669  Glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
MYA_1670  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
MYA_1726  Glycerate kinase [KO:K00865] [EC:2.7.1.165]
MYA_3441  Tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
MYA_0572  4-Hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
MYA_4103  Oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
MYA_0922  NAD-dependent formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
MYA_4671  Formate dehydrogenase O alpha subunit [KO:K00123] [EC:1.17.1.9]
MYA_0923  NAD-dependent formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
MYA_0924  NAD-dependent formate dehydrogenase beta subunit [KO:K00124]
MYA_4670  Formate dehydrogenase O beta subunit [KO:K00124]
MYA_0925  NAD-dependent formate dehydrogenase gamma subunit [KO:K00127]
MYA_4669  Formate dehydrogenase O gamma subunit [KO:K00127]
MYA_2343  Kynurenine formamidase, bacterial [KO:K07130] [EC:3.5.1.9]
MYA_3035  Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
MYA_2542  Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
MYA_1953  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
buk00010  Glycolysis / Gluconeogenesis
buk00020  Citrate cycle (TCA cycle)
buk00030  Pentose phosphate pathway
buk00053  Ascorbate and aldarate metabolism
buk00071  Fatty acid degradation
buk00230  Purine metabolism
buk00250  Alanine, aspartate and glutamate metabolism
buk00260  Glycine, serine and threonine metabolism
buk00620  Pyruvate metabolism
buk00710  Carbon fixation by Calvin cycle
buk00750  Vitamin B6 metabolism
buk00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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