KEGG   PATHWAY: buz00630
Entry
buz00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paraburkholderia phytofirmans OLGA172
Class
Metabolism; Carbohydrate metabolism
Pathway map
buz00630  Glyoxylate and dicarboxylate metabolism
buz00630

Module
buz_M00012  Glyoxylate cycle [PATH:buz00630]
buz_M00621  Glycine cleavage system [PATH:buz00630]
Other DBs
GO: 0046487 0043648
Organism
Paraburkholderia phytofirmans OLGA172 [GN:buz]
Gene
AYM40_12870  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
AYM40_33645  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
AYM40_36710  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
AYM40_27855  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
AYM40_28435  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
AYM40_32775  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
AYM40_05675  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
AYM40_10310  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
AYM40_12890  malate synthase A [KO:K01638] [EC:2.3.3.9]
AYM40_10750  malate synthase G [KO:K01638] [EC:2.3.3.9]
AYM40_22075  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AYM40_07280  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AYM40_22110  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AYM40_27730  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AYM40_16545  citrate synthase [KO:K01647] [EC:2.3.3.1]
AYM40_21270  citrate synthase [KO:K01647] [EC:2.3.3.1]
AYM40_22050  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AYM40_11310  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYM40_11335  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYM40_23215  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYM40_23240  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYM40_26580  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYM40_01020  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYM40_26340  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYM40_27610  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYM40_31690  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYM40_08250  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYM40_10975  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYM40_36530  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
AYM40_11330  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
AYM40_25325  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
AYM40_27545  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
AYM40_30620  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
AYM40_30710  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
AYM40_10190  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
AYM40_21615  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
AYM40_05770  phosphate acetyltransferase [KO:K17865] [EC:4.2.1.55]
AYM40_05775  monoamine oxidase [KO:K17865] [EC:4.2.1.55]
AYM40_25340  hypothetical protein [KO:K01847] [EC:5.4.99.2]
AYM40_02375  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
AYM40_02370  glcE; glycolate oxidase [KO:K11472] [EC:1.1.99.14]
AYM40_02365  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
AYM40_02325  catalase [KO:K03781] [EC:1.11.1.6]
AYM40_00925  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
AYM40_14785  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AYM40_08985  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AYM40_34240  glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
AYM40_14745  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
AYM40_18270  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
AYM40_20590  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
AYM40_28860  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AYM40_10665  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AYM40_12400  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AYM40_13505  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AYM40_27915  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AYM40_32480  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AYM40_02620  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AYM40_25825  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AYM40_19935  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
AYM40_12350  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
AYM40_12370  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
AYM40_19925  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
AYM40_13420  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AYM40_08090  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AYM40_30480  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AYM40_19930  glycine cleavage system protein H [KO:K02437]
AYM40_09345  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
AYM40_09340  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
AYM40_24420  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
AYM40_11135  glycerate kinase [KO:K00865] [EC:2.7.1.165]
AYM40_10720  aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
AYM40_34520  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
AYM40_17575  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AYM40_29940  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
AYM40_29945  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
AYM40_30120  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
AYM40_30125  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
AYM40_15230  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
AYM40_15225  formate dehydrogenase [KO:K00124]
AYM40_29935  formate dehydrogenase [KO:K00124]
AYM40_30130  formate dehydrogenase [KO:K00124]
AYM40_15220  formate dehydrogenase [KO:K00127]
AYM40_29930  formate dehydrogenase [KO:K00127]
AYM40_30135  formate dehydrogenase [KO:K00127]
AYM40_16800  kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
AYM40_12355  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AYM40_25945  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AYM40_01770  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AYM40_06305  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
AYM40_34130  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
AYM40_34135  formyl-coenzyme A transferase [KO:K07749] [EC:2.8.3.16]
AYM40_32095  formyl-coenzyme A transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
buz00010  Glycolysis / Gluconeogenesis
buz00020  Citrate cycle (TCA cycle)
buz00030  Pentose phosphate pathway
buz00053  Ascorbate and aldarate metabolism
buz00071  Fatty acid degradation
buz00230  Purine metabolism
buz00250  Alanine, aspartate and glutamate metabolism
buz00260  Glycine, serine and threonine metabolism
buz00620  Pyruvate metabolism
buz00710  Carbon fixation by Calvin cycle
buz00750  Vitamin B6 metabolism
buz00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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