KEGG   PATHWAY: calh00020
Entry
calh00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Calothrix sp. 336/3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
calh00020  Citrate cycle (TCA cycle)
calh00020

Module
calh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:calh00020]
calh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:calh00020]
Other DBs
GO: 0006099
Organism
Calothrix sp. 336/3 [GN:calh]
Gene
IJ00_17700  citrate synthase [KO:K01647] [EC:2.3.3.1]
IJ00_21065  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
IJ00_20645  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IJ00_25475  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
IJ00_01405  CoA-binding protein [KO:K01902] [EC:6.2.1.5]
IJ00_01410  ATPase [KO:K01903] [EC:6.2.1.5]
IJ00_16265  fumarate reductase [KO:K00239] [EC:1.3.5.1]
IJ00_15025  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
IJ00_20425  heterodisulfide reductase [KO:K00241]
IJ00_19110  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IJ00_11320  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
IJ00_21595  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
IJ00_15835  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
IJ00_26200  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
calh00010  Glycolysis / Gluconeogenesis
calh00053  Ascorbate and aldarate metabolism
calh00061  Fatty acid biosynthesis
calh00071  Fatty acid degradation
calh00190  Oxidative phosphorylation
calh00220  Arginine biosynthesis
calh00250  Alanine, aspartate and glutamate metabolism
calh00280  Valine, leucine and isoleucine degradation
calh00350  Tyrosine metabolism
calh00470  D-Amino acid metabolism
calh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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