KEGG   PATHWAY: cap00020
Entry
cap00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Caldilinea aerophila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cap00020  Citrate cycle (TCA cycle)
cap00020

Module
cap_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cap00020]
cap_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cap00020]
cap_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cap00020]
cap_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cap00020]
cap_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cap00020]
Other DBs
GO: 0006099
Organism
Caldilinea aerophila [GN:cap]
Gene
CLDAP_12250  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CLDAP_39780  acoN; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CLDAP_37080  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CLDAP_39200  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CLDAP_24550  putative 2-oxoglutarate ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CLDAP_25810  putative 2-oxoglutarate ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CLDAP_24560  putative 2-oxoglutarate ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CLDAP_25800  putative 2-oxoglutarate ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CLDAP_25790  putative 2-oxoglutarate ferredoxin oxidoreductase gamma subunit [KO:K00177] [EC:1.2.7.3]
CLDAP_25820  vorC; ketoisovalerate oxidoreductase subunit VorC [KO:K00176] [EC:1.2.7.3]
CLDAP_18020  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
CLDAP_18010  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
CLDAP_30840  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CLDAP_30830  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CLDAP_30850  sdhC; succinate dehydrogenase cytochrome b subunit [KO:K00241]
CLDAP_04390  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
CLDAP_38950  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CLDAP_21030  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
CLDAP_06210  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
CLDAP_29450  pdhC; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
CLDAP_19210  pdhC; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
CLDAP_34860  pdhC; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
CLDAP_36890  putative pyruvate-ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cap00010  Glycolysis / Gluconeogenesis
cap00053  Ascorbate and aldarate metabolism
cap00061  Fatty acid biosynthesis
cap00071  Fatty acid degradation
cap00190  Oxidative phosphorylation
cap00220  Arginine biosynthesis
cap00250  Alanine, aspartate and glutamate metabolism
cap00280  Valine, leucine and isoleucine degradation
cap00350  Tyrosine metabolism
cap00470  D-Amino acid metabolism
cap00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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