KEGG   PATHWAY: cave00630
Entry
cave00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Corylus avellana (European hazelnut)
Class
Metabolism; Carbohydrate metabolism
Pathway map
cave00630  Glyoxylate and dicarboxylate metabolism
cave00630

Module
cave_M00012  Glyoxylate cycle [PATH:cave00630]
cave_M00532  Photorespiration [PATH:cave00630]
cave_M00621  Glycine cleavage system [PATH:cave00630]
Other DBs
GO: 0046487 0043648
Organism
Corylus avellana (European hazelnut) [GN:cave]
Gene
132180385  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
132180507  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
132187487  acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
132176672  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
132187764  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
132177094  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
132184707  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
132175571  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
132170769  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
132175157  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
132165943  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
132180947  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
132181406  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
132180412  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
132170981  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
132173875  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
132173883  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
132180894  acetyl-CoA acetyltransferase 2 [KO:K00626] [EC:2.3.1.9]
132170307  acetyl-CoA acetyltransferase 2 isoform X1 [KO:K00626] [EC:2.3.1.9]
132175691  glycolate oxidase-like [KO:K11517] [EC:1.1.3.15]
132187230  peroxisomal (S)-2-hydroxyacid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
132188153  peroxisomal (S)-2-hydroxyacid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
132171391  glycolate oxidase 1 [KO:K11517] [EC:1.1.3.15]
132186145  peroxisomal (S)-2-hydroxyacid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
132186830  peroxisomal (S)-2-hydroxyacid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
132186954  peroxisomal (S)-2-hydroxyacid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
132189213  catalase isozyme 3-like [KO:K03781] [EC:1.11.1.6]
132189215  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
132174889  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
132188749  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
132188275  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
132171015  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
132184428  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
132176942  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
132170734  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
132171179  phosphoglycolate phosphatase 2-like isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
30215222  rbcL; ribulose-1 [KO:K01601] [EC:4.1.1.39]
132189721  ribulose bisphosphate carboxylase small subunit, chloroplastic 3-like [KO:K01602] [EC:4.1.1.39]
132180985  ribulose bisphosphate carboxylase small subunit, chloroplastic [KO:K01602] [EC:4.1.1.39]
132185609  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
132185724  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
132164040  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
132177564  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
132161998  ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
132177399  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
132167303  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
132180783  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
132183841  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
132177390  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
132177400  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
132177680  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
132189422  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
132180061  serine hydroxymethyltransferase 3, chloroplastic-like isoform X1 [KO:K00600] [EC:2.1.2.1]
132170511  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
132184236  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
132184607  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
132183751  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
132172457  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
132162791  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
132163379  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
132171288  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
132174968  glycine cleavage system H protein, mitochondrial [KO:K02437]
132187417  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
132180435  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
132180436  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
132175153  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
132186254  uncharacterized protein LOC132186254 isoform X1 [KO:K01455] [EC:3.5.1.49]
132175555  probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]
132183202  probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]
132183254  probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
cave00010  Glycolysis / Gluconeogenesis
cave00020  Citrate cycle (TCA cycle)
cave00030  Pentose phosphate pathway
cave00053  Ascorbate and aldarate metabolism
cave00071  Fatty acid degradation
cave00230  Purine metabolism
cave00250  Alanine, aspartate and glutamate metabolism
cave00260  Glycine, serine and threonine metabolism
cave00620  Pyruvate metabolism
cave00710  Carbon fixation by Calvin cycle
cave00750  Vitamin B6 metabolism
cave00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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