KEGG   PATHWAY: ccai00020
Entry
ccai00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Conexivisphaera calida
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccai00020  Citrate cycle (TCA cycle)
ccai00020

Module
ccai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ccai00020]
ccai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccai00020]
ccai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ccai00020]
ccai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccai00020]
Other DBs
GO: 0006099
Organism
Conexivisphaera calida [GN:ccai]
Gene
NAS2_1488  Citrate synthase [KO:K01647] [EC:2.3.3.1]
NAS2_0103  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
NAS2_0595  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NAS2_1529  Isocitrate dehydrogenase [NAD] [KO:K00030] [EC:1.1.1.41]
NAS2_0530  Isocitrate dehydrogenase [NAD] [KO:K00030] [EC:1.1.1.41]
NAS2_0193  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NAS2_1197  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NAS2_1464  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NAS2_0792  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NAS2_1196  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NAS2_1463  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NAS2_0098  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NAS2_0793  2-oxoglutarate oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
NAS2_1462  2-oxoglutarate oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
NAS2_0097  2-oxoglutarate synthase subunit KorC [KO:K00177] [EC:1.2.7.3]
NAS2_1465  2-oxoglutarate oxidoreductase, delta subunit, putative [KO:K00176] [EC:1.2.7.3]
NAS2_0613  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
NAS2_0612  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
NAS2_0403  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NAS2_0406  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
NAS2_0404  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
NAS2_0405  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
NAS2_0387  Fumarate hydratase class I, aerobic [KO:K01678] [EC:4.2.1.2]
NAS2_0827  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
NAS2_0515  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NAS2_1234  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
NAS2_1235  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
NAS2_1232  Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
NAS2_1233  Pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccai00010  Glycolysis / Gluconeogenesis
ccai00061  Fatty acid biosynthesis
ccai00071  Fatty acid degradation
ccai00190  Oxidative phosphorylation
ccai00220  Arginine biosynthesis
ccai00250  Alanine, aspartate and glutamate metabolism
ccai00280  Valine, leucine and isoleucine degradation
ccai00350  Tyrosine metabolism
ccai00470  D-Amino acid metabolism
ccai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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