KEGG   PATHWAY: ccax03430
Entry
ccax03430                   Pathway                                
Name
Mismatch repair - Cupriavidus cauae
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
ccax03430  Mismatch repair
ccax03430

Other DBs
GO: 0006298
Organism
Cupriavidus cauae [GN:ccax]
Gene
KZ686_09310  mutS; DNA mismatch repair protein MutS [KO:K03555]
KZ686_00600  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
KZ686_05180  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
KZ686_14655  UvrD-helicase domain-containing protein [KO:K03657] [EC:5.6.2.4]
KZ686_15095  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
KZ686_14585  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
KZ686_09130  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
KZ686_05800  single-stranded DNA-binding protein [KO:K03111]
KZ686_07955  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
KZ686_03880  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
KZ686_13290  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
KZ686_00910  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
KZ686_11050  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
KZ686_13590  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
KZ686_19290  3'-5' exoribonuclease [KO:K02342] [EC:2.7.7.7]
KZ686_06310  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
KZ686_12370  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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