KEGG   PATHWAY: ccor00020
Entry
ccor00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter corcagiensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccor00020  Citrate cycle (TCA cycle)
ccor00020

Module
ccor_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ccor00020]
ccor_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccor00020]
ccor_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccor00020]
Other DBs
GO: 0006099
Organism
Campylobacter corcagiensis [GN:ccor]
Gene
CCORG_1555  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CCORG_0958  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CCORG_0761  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
CCORG_0764  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CCORG_0765  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CCORG_0766  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
CCORG_0763  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
CCORG_0640  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
CCORG_0641  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
CCORG_0639  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
CCORG_0869  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CCORG_0762  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
CCORG_0480  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
CCORG_0733  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
CCORG_0479  pycB; pyruvate carboxylase, subunit B [KO:K01960] [EC:6.4.1.1]
CCORG_0503  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CCORG_1435  por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccor00010  Glycolysis / Gluconeogenesis
ccor00053  Ascorbate and aldarate metabolism
ccor00061  Fatty acid biosynthesis
ccor00071  Fatty acid degradation
ccor00190  Oxidative phosphorylation
ccor00220  Arginine biosynthesis
ccor00250  Alanine, aspartate and glutamate metabolism
ccor00280  Valine, leucine and isoleucine degradation
ccor00350  Tyrosine metabolism
ccor00470  D-Amino acid metabolism
ccor00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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