KEGG   PATHWAY: ccun00020
Entry
ccun00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter cuniculorum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccun00020  Citrate cycle (TCA cycle)
ccun00020

Module
ccun_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ccun00020]
ccun_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccun00020]
ccun_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccun00020]
Other DBs
GO: 0006099
Organism
Campylobacter cuniculorum [GN:ccun]
Gene
CCUN_0366  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CCUN_0828  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CCUN_1052  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
CCUN_1047  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CCUN_1046  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CCUN_1045  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
CCUN_1048  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
CCUN_1049  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
CCUN_1050  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
CCUN_0506  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
CCUN_0507  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
CCUN_0505  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
CCUN_0059  tartrate dehydratase/fumarate hydratase, alpha subunit [KO:K01677] [EC:4.2.1.2]
CCUN_0058  tartrate dehydratase/fumarate hydratase, beta subunit [KO:K01678] [EC:4.2.1.2]
CCUN_1051  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
CCUN_0167  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
CCUN_1252  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
CCUN_0911  pycB; pyruvate carboxylase, subunit B [KO:K01960] [EC:6.4.1.1]
CCUN_0912  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CCUN_0067  por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccun00010  Glycolysis / Gluconeogenesis
ccun00061  Fatty acid biosynthesis
ccun00190  Oxidative phosphorylation
ccun00220  Arginine biosynthesis
ccun00250  Alanine, aspartate and glutamate metabolism
ccun00280  Valine, leucine and isoleucine degradation
ccun00350  Tyrosine metabolism
ccun00470  D-Amino acid metabolism
ccun00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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