PATHWAY: cfar01100 Help Entry cfar01100                   Pathway                                 Name Metabolic pathways - Citrobacter farmeri Class BRITE hierarchy Pathway map cfar01100   Metabolic pathways Module cfar_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:cfar01100] cfar_M00002   Glycolysis, core module involving three-carbon compounds [PATH:cfar01100] cfar_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cfar01100] cfar_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:cfar01100] cfar_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:cfar01100] cfar_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:cfar01100] cfar_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:cfar01100] cfar_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:cfar01100] cfar_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:cfar01100] cfar_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cfar01100] cfar_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cfar01100] cfar_M00012   Glyoxylate cycle [PATH:cfar01100] cfar_M00015   Proline biosynthesis, glutamate => proline [PATH:cfar01100] cfar_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:cfar01100] cfar_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:cfar01100] cfar_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:cfar01100] cfar_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:cfar01100] cfar_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:cfar01100] cfar_M00021   Cysteine biosynthesis, serine => cysteine [PATH:cfar01100] cfar_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:cfar01100] cfar_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:cfar01100] cfar_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:cfar01100] cfar_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:cfar01100] cfar_M00026   Histidine biosynthesis, PRPP => histidine [PATH:cfar01100] cfar_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:cfar01100] cfar_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:cfar01100] cfar_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:cfar01100] cfar_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:cfar01100] cfar_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:cfar01100] cfar_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:cfar01100] cfar_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:cfar01100] cfar_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:cfar01100] cfar_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:cfar01100] cfar_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:cfar01100] cfar_M00063   CMP-KDO biosynthesis [PATH:cfar01100] cfar_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:cfar01100] cfar_M00082   Fatty acid biosynthesis, initiation [PATH:cfar01100] cfar_M00083   Fatty acid biosynthesis, elongation [PATH:cfar01100] cfar_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:cfar01100] cfar_M00087   beta-Oxidation [PATH:cfar01100] cfar_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:cfar01100] cfar_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:cfar01100] cfar_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:cfar01100] cfar_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:cfar01100] cfar_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:cfar01100] cfar_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:cfar01100] cfar_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:cfar01100] cfar_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:cfar01100] cfar_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:cfar01100] cfar_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:cfar01100] cfar_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:cfar01100] cfar_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:cfar01100] cfar_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:cfar01100] cfar_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:cfar01100] cfar_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:cfar01100] cfar_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:cfar01100] cfar_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:cfar01100] cfar_M00149   Succinate dehydrogenase, prokaryotes [PATH:cfar01100] cfar_M00150   Fumarate reductase, prokaryotes [PATH:cfar01100] cfar_M00151   Cytochrome bc1 complex respiratory unit [PATH:cfar01100] cfar_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:cfar01100] cfar_M00168   CAM (Crassulacean acid metabolism), dark [PATH:cfar01100] cfar_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:cfar01100] cfar_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cfar01100] cfar_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:cfar01100] cfar_M00417   Cytochrome o ubiquinol oxidase [PATH:cfar01100] cfar_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:cfar01100] cfar_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:cfar01100] cfar_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:cfar01100] cfar_M00550   Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:cfar01100] cfar_M00551   Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:cfar01100] cfar_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:cfar01100] cfar_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:cfar01100] cfar_M00555   Betaine biosynthesis, choline => betaine [PATH:cfar01100] cfar_M00568   Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:cfar01100] cfar_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:cfar01100] cfar_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:cfar01100] cfar_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:cfar01100] cfar_M00621   Glycine cleavage system [PATH:cfar01100] cfar_M00631   D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:cfar01100] cfar_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:cfar01100] cfar_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:cfar01100] cfar_M00844   Arginine biosynthesis, ornithine => arginine [PATH:cfar01100] cfar_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:cfar01100] cfar_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:cfar01100] cfar_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:cfar01100] cfar_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:cfar01100] cfar_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:cfar01100] cfar_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:cfar01100] cfar_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:cfar01100] cfar_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:cfar01100] cfar_M00924   Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:cfar01100] cfar_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:cfar01100] cfar_M00956   Lysine degradation, bacteria, L-lysine => succinate [PATH:cfar01100] cfar_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:cfar01100] cfar_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:cfar01100] cfar_M00970   Proline degradation, proline => glutamate [PATH:cfar01100] Organism Citrobacter farmeri [GN:cfar] Related pathway cfar00010   Glycolysis / Gluconeogenesis cfar00020   Citrate cycle (TCA cycle) cfar00030   Pentose phosphate pathway cfar00040   Pentose and glucuronate interconversions cfar00051   Fructose and mannose metabolism cfar00052   Galactose metabolism cfar00053   Ascorbate and aldarate metabolism cfar00061   Fatty acid biosynthesis cfar00071   Fatty acid degradation cfar00074   Mycolic acid biosynthesis cfar00130   Ubiquinone and other terpenoid-quinone biosynthesis cfar00190   Oxidative phosphorylation cfar00220   Arginine biosynthesis cfar00230   Purine metabolism cfar00240   Pyrimidine metabolism cfar00250   Alanine, aspartate and glutamate metabolism cfar00260   Glycine, serine and threonine metabolism cfar00261   Monobactam biosynthesis cfar00270   Cysteine and methionine metabolism cfar00280   Valine, leucine and isoleucine degradation cfar00290   Valine, leucine and isoleucine biosynthesis cfar00300   Lysine biosynthesis cfar00310   Lysine degradation cfar00330   Arginine and proline metabolism cfar00332   Carbapenem biosynthesis cfar00340   Histidine metabolism cfar00350   Tyrosine metabolism cfar00360   Phenylalanine metabolism cfar00361   Chlorocyclohexane and chlorobenzene degradation cfar00362   Benzoate degradation cfar00364   Fluorobenzoate degradation cfar00380   Tryptophan metabolism cfar00400   Phenylalanine, tyrosine and tryptophan biosynthesis cfar00401   Novobiocin biosynthesis cfar00410   beta-Alanine metabolism cfar00430   Taurine and hypotaurine metabolism cfar00440   Phosphonate and phosphinate metabolism cfar00450   Selenocompound metabolism cfar00460   Cyanoamino acid metabolism cfar00470   D-Amino acid metabolism cfar00480   Glutathione metabolism cfar00500   Starch and sucrose metabolism cfar00511   Other glycan degradation cfar00520   Amino sugar and nucleotide sugar metabolism cfar00521   Streptomycin biosynthesis cfar00523   Polyketide sugar unit biosynthesis cfar00525   Acarbose and validamycin biosynthesis cfar00540   Lipopolysaccharide biosynthesis cfar00541   O-Antigen nucleotide sugar biosynthesis cfar00542   O-Antigen repeat unit biosynthesis cfar00543   Exopolysaccharide biosynthesis cfar00550   Peptidoglycan biosynthesis cfar00552   Teichoic acid biosynthesis cfar00561   Glycerolipid metabolism cfar00562   Inositol phosphate metabolism cfar00564   Glycerophospholipid metabolism cfar00565   Ether lipid metabolism cfar00592   alpha-Linolenic acid metabolism cfar00600   Sphingolipid metabolism cfar00620   Pyruvate metabolism cfar00622   Xylene degradation cfar00623   Toluene degradation cfar00625   Chloroalkane and chloroalkene degradation cfar00626   Naphthalene degradation cfar00627   Aminobenzoate degradation cfar00630   Glyoxylate and dicarboxylate metabolism cfar00633   Nitrotoluene degradation cfar00640   Propanoate metabolism cfar00650   Butanoate metabolism cfar00660   C5-Branched dibasic acid metabolism cfar00670   One carbon pool by folate cfar00680   Methane metabolism cfar00710   Carbon fixation by Calvin cycle cfar00720   Other carbon fixation pathways cfar00730   Thiamine metabolism cfar00740   Riboflavin metabolism cfar00750   Vitamin B6 metabolism cfar00760   Nicotinate and nicotinamide metabolism cfar00770   Pantothenate and CoA biosynthesis cfar00780   Biotin metabolism cfar00785   Lipoic acid metabolism cfar00790   Folate biosynthesis cfar00860   Porphyrin metabolism cfar00900   Terpenoid backbone biosynthesis cfar00903   Limonene degradation cfar00907   Pinene, camphor and geraniol degradation cfar00910   Nitrogen metabolism cfar00920   Sulfur metabolism cfar00930   Caprolactam degradation cfar00946   Degradation of flavonoids cfar00999   Biosynthesis of various plant secondary metabolites cfar01040   Biosynthesis of unsaturated fatty acids cfar01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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