KEGG   PATHWAY: cfar00030
Entry
cfar00030                   Pathway                                
Name
Pentose phosphate pathway - Citrobacter farmeri
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cfar00030  Pentose phosphate pathway
cfar00030

Module
cfar_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:cfar00030]
cfar_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:cfar00030]
cfar_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:cfar00030]
cfar_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:cfar00030]
cfar_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:cfar00030]
cfar_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:cfar00030]
cfar_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:cfar00030]
Other DBs
GO: 0006098
Organism
Citrobacter farmeri [GN:cfar]
Gene
CI104_23465  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
CI104_04570  glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
CI104_04575  glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
CI104_15320  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
CI104_08225  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
CI104_16395  phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
CI104_21720  epimerase [KO:K01783] [EC:5.1.3.1]
CI104_01810  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
CI104_07260  transketolase [KO:K00615] [EC:2.2.1.1]
CI104_07265  transketolase [KO:K00615] [EC:2.2.1.1]
CI104_08975  transketolase [KO:K00615] [EC:2.2.1.1]
CI104_08980  transketolase [KO:K00615] [EC:2.2.1.1]
CI104_17605  transketolase [KO:K00615] [EC:2.2.1.1]
CI104_17610  transketolase [KO:K00615] [EC:2.2.1.1]
CI104_04275  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
CI104_18330  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
CI104_04490  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
CI104_18325  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
CI104_21125  ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
CI104_15000  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
CI104_09945  deoC; 2-deoxyribose-5-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
CI104_14555  deoC; 2-deoxyribose-5-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
CI104_21180  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
CI104_09940  ribokinase [KO:K00852] [EC:2.7.1.15]
CI104_25085  ribokinase [KO:K00852] [EC:2.7.1.15]
CI104_00180  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
CI104_21170  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
CI104_07770  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
CI104_23120  ribose 1,5-bisphosphokinase [KO:K05774] [EC:2.7.4.23]
CI104_14460  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
CI104_15315  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
CI104_10025  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CI104_15310  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CI104_00320  4-hydroxy-2-ketovalerate aldolase [KO:K17463] [EC:4.1.2.14]
CI104_21450  SDR family oxidoreductase [KO:K00034] [EC:1.1.1.47]
CI104_05100  membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family [KO:K00117] [EC:1.1.5.2]
CI104_00895  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
CI104_21940  idnK; gluconate kinase [KO:K00851] [EC:2.7.1.12]
CI104_01525  gluconokinase [KO:K00851] [EC:2.7.1.12]
CI104_00905  sugar kinase [KO:K00874] [EC:2.7.1.45]
CI104_01090  sugar kinase [KO:K00874] [EC:2.7.1.45]
CI104_00295  PTS fructose transporter subunit IIA [KO:K17464] [EC:2.7.1.203]
CI104_00300  PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB [KO:K17465] [EC:2.7.1.203]
CI104_00305  PTS sugar transporter subunit IIC [KO:K17466]
CI104_00310  PTS fructose transporter subunit IID [KO:K17467]
CI104_00315  SelA-like pyridoxal phosphate-dependent enzyme [KO:K17468] [EC:4.3.1.29]
CI104_16645  fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
CI104_06185  fba; fructose-1,6-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
CI104_04345  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
CI104_24350  ketose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
CI104_09865  ketose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
CI104_22230  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
CI104_24145  glpX; fructose-bisphosphatase class II [KO:K02446] [EC:3.1.3.11]
CI104_04295  glpX; fructose-bisphosphatase class II [KO:K02446] [EC:3.1.3.11]
CI104_24210  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
CI104_24365  permease [KO:K00850] [EC:2.7.1.11]
CI104_11910  6-phosphofructokinase II [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
cfar00010  Glycolysis / Gluconeogenesis
cfar00040  Pentose and glucuronate interconversions
cfar00052  Galactose metabolism
cfar00230  Purine metabolism
cfar00240  Pyrimidine metabolism
cfar00340  Histidine metabolism
cfar00630  Glyoxylate and dicarboxylate metabolism
cfar00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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