KEGG   PATHWAY: cfar00030
Entry
cfar00030                   Pathway                                
Name
Pentose phosphate pathway - Citrobacter farmeri
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cfar00030  Pentose phosphate pathway
cfar00030

Module
cfar_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:cfar00030]
cfar_M00005  PRPP biosynthesis, ribose-5P => PRPP [PATH:cfar00030]
cfar_M00006  Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:cfar00030]
cfar_M00007  Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:cfar00030]
cfar_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:cfar00030]
cfar_M00061  Glucuronate degradation, glucuronate => pyruvate + glyceraldehyde-3P [PATH:cfar00030]
cfar_M00631  Galacturonate degradation, bacteria, galacturonate => pyruvate + glyceraldehyde-3P [PATH:cfar00030]
Other DBs
GO: 0006098
Organism
Citrobacter farmeri [GN:cfar]
Gene
CI104_00180  rbsK; ribokinase [KO:K28747]
CI104_00295  [KO:K17464] [EC:2.7.1.203]
CI104_00300  [KO:K17465] [EC:2.7.1.203]
CI104_00305  [KO:K17466]
CI104_00310  [KO:K17467]
CI104_00315  [KO:K17468] [EC:4.3.1.29]
CI104_00320  [KO:K17463] [EC:4.1.2.14]
CI104_00895  [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
CI104_00905  [KO:K00874] [EC:2.7.1.45]
CI104_01090  [KO:K00874] [EC:2.7.1.45]
CI104_01525  [KO:K00851] [EC:2.7.1.12]
CI104_01810  [KO:K01783] [EC:5.1.3.1]
CI104_04275  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
CI104_04295  glpX; fructose-bisphosphatase class II [KO:K02446] [EC:3.1.3.11]
CI104_04345  [KO:K01624] [EC:4.1.2.13]
CI104_04490  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
CI104_04570  [KO:K06859] [EC:5.3.1.9]
CI104_04575  [KO:K06859] [EC:5.3.1.9]
CI104_05100  [KO:K00117] [EC:1.1.5.2]
CI104_06185  fba; fructose-1,6-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
CI104_07260  [KO:K00615] [EC:2.2.1.1]
CI104_07265  [KO:K00615] [EC:2.2.1.1]
CI104_07770  [KO:K01835] [EC:5.4.2.2]
CI104_08225  [KO:K07404] [EC:3.1.1.31]
CI104_08975  [KO:K00615] [EC:2.2.1.1]
CI104_08980  [KO:K00615] [EC:2.2.1.1]
CI104_09865  [KO:K01624] [EC:4.1.2.13]
CI104_09940  [KO:K00852] [EC:2.7.1.15]
CI104_09945  deoC; 2-deoxyribose-5-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
CI104_10025  [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CI104_11910  [KO:K16370] [EC:2.7.1.11]
CI104_14460  [KO:K00948] [EC:2.7.6.1]
CI104_14555  deoC; 2-deoxyribose-5-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
CI104_15000  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
CI104_15310  [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CI104_15315  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
CI104_15320  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
CI104_16395  [KO:K00033] [EC:1.1.1.44 1.1.1.343]
CI104_16645  [KO:K11645] [EC:4.1.2.13]
CI104_17605  [KO:K00615] [EC:2.2.1.1]
CI104_17610  [KO:K00615] [EC:2.2.1.1]
CI104_18325  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
CI104_18330  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
CI104_21125  [KO:K01807] [EC:5.3.1.6]
CI104_21170  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
CI104_21180  [KO:K01619] [EC:4.1.2.4]
CI104_21450  [KO:K00034] [EC:1.1.1.47]
CI104_21720  [KO:K01783] [EC:5.1.3.1]
CI104_21940  idnK; gluconate kinase [KO:K00851] [EC:2.7.1.12]
CI104_22230  [KO:K03841] [EC:3.1.3.11]
CI104_23120  [KO:K05774] [EC:2.7.4.23]
CI104_23465  [KO:K01810] [EC:5.3.1.9]
CI104_24145  glpX; fructose-bisphosphatase class II [KO:K02446] [EC:3.1.3.11]
CI104_24210  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
CI104_24350  [KO:K01624] [EC:4.1.2.13]
CI104_24365  [KO:K00850] [EC:2.7.1.11]
CI104_25085  [KO:K00852] [EC:2.7.1.15]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
cfar00010  Glycolysis / Gluconeogenesis
cfar00040  Pentose and glucuronate interconversions
cfar00052  Galactose metabolism
cfar00230  Purine metabolism
cfar00240  Pyrimidine metabolism
cfar00340  Histidine metabolism
cfar00630  Glyoxylate and dicarboxylate metabolism
cfar00750  Vitamin B6 metabolism
KO pathway
ko00030   

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