KEGG   PATHWAY: cfar00010
Entry
cfar00010                   Pathway                                
Name
Glycolysis / Gluconeogenesis - Citrobacter farmeri
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cfar00010  Glycolysis / Gluconeogenesis
cfar00010

Module
cfar_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:cfar00010]
cfar_M00002  Glycolysis, core module involving three-carbon compounds [PATH:cfar00010]
cfar_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cfar00010]
cfar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cfar00010]
Other DBs
GO: 0006096 0006094
Organism
Citrobacter farmeri [GN:cfar]
Gene
CI104_17975  glucokinase [KO:K00845] [EC:2.7.1.2]
CI104_23465  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
CI104_04570  glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
CI104_04575  glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
CI104_24210  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
CI104_24365  permease [KO:K00850] [EC:2.7.1.11]
CI104_11910  6-phosphofructokinase II [KO:K16370] [EC:2.7.1.11]
CI104_22230  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
CI104_24145  glpX; fructose-bisphosphatase class II [KO:K02446] [EC:3.1.3.11]
CI104_04295  glpX; fructose-bisphosphatase class II [KO:K02446] [EC:3.1.3.11]
CI104_16645  fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
CI104_06185  fba; fructose-1,6-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
CI104_04345  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
CI104_24350  ketose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
CI104_09865  ketose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
CI104_24165  triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
CI104_11625  gap; aldehyde dehydrogenase [KO:K00134] [EC:1.2.1.12]
CI104_13600  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
CI104_04340  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
CI104_08160  gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
CI104_04415  phosphoglycerate mutase [KO:K15634] [EC:5.4.2.11]
CI104_00640  2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
CI104_20035  phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
CI104_12170  pyruvate kinase PykF [KO:K00873] [EC:2.7.1.40]
CI104_15330  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
CI104_12015  phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
CI104_05010  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CI104_05015  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
CI104_05020  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CI104_13725  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
CI104_13580  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
CI104_26390  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
CI104_27435  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
CI104_25785  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
CI104_14295  bifunctional acetaldehyde-CoA/alcohol dehydrogenase [KO:K04072] [EC:1.2.1.10 1.1.1.1]
CI104_09930  zinc-dependent alcohol dehydrogenase [KO:K13953] [EC:1.1.1.1]
CI104_26350  L-threonine dehydrogenase [KO:K13954] [EC:1.1.1.1]
CI104_00750  L-threonine dehydrogenase [KO:K13954] [EC:1.1.1.1]
CI104_21935  NAD(P)-dependent alcohol dehydrogenase [KO:K12957] [EC:1.1.1.2 1.1.1.183]
CI104_18260  ethanolamine utilization ethanol dehydrogenase EutG [KO:K04022]
CI104_00755  aldehyde dehydrogenase [KO:K00138] [EC:1.2.1.-]
CI104_23215  acs; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
CI104_24490  aldose epimerase [KO:K01785] [EC:5.1.3.3]
CI104_18690  aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
CI104_08170  galM; galactose-1-epimerase [KO:K01785] [EC:5.1.3.3]
CI104_10145  bifunctional glucose-1-phosphatase/inositol phosphatase [KO:K01085] [EC:3.1.3.10]
CI104_24455  glucose-1-phosphatase [KO:K20866] [EC:3.1.3.10]
CI104_07770  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
CI104_11620  D-hexose-6-phosphate mutarotase [KO:K01792] [EC:5.1.3.15]
CI104_21470  hypothetical protein [KO:K01792] [EC:5.1.3.15]
CI104_01730  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CI104_11855  6-phospho-beta-glucosidase [KO:K01222] [EC:3.2.1.86]
CI104_21055  6-phospho-beta-glucosidase [KO:K01223] [EC:3.2.1.86]
CI104_19785  6-phospho-beta-glucosidase [KO:K01223] [EC:3.2.1.86]
CI104_18465  6-phospho-beta-glucosidase [KO:K01223] [EC:3.2.1.86]
CI104_00255  6-phospho-beta-glucosidase [KO:K01223] [EC:3.2.1.86]
CI104_18140  glucose-specific phosphotransferase enzyme IIA component [KO:K02777] [EC:2.7.1.-]
CI104_10575  PTS glucose transporter subunit IIBC [KO:K02779] [EC:2.7.1.199]
CI104_20025  PTS glucose transporter subunit IIB [KO:K02791] [EC:2.7.1.199 2.7.1.208]
CI104_12555  PTS sugar transporter subunit IIBC [KO:K02791] [EC:2.7.1.199 2.7.1.208]
CI104_07020  PTS N-acetylglucosamine transporter subunit IICB [KO:K20118] [EC:2.7.1.199]
CI104_19780  PTS cellobiose/arbutin/salicin transporter subunit IIBC [KO:K02753] [EC:2.7.1.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cfar00020  Citrate cycle (TCA cycle)
cfar00030  Pentose phosphate pathway
cfar00500  Starch and sucrose metabolism
cfar00620  Pyruvate metabolism
cfar00640  Propanoate metabolism
cfar00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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