KEGG   PATHWAY: cfer00020
Entry
cfer00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Clostridium fermenticellae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cfer00020  Citrate cycle (TCA cycle)
cfer00020

Module
cfer_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cfer00020]
cfer_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cfer00020]
cfer_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cfer00020]
Other DBs
GO: 0006099
Organism
Clostridium fermenticellae [GN:cfer]
Gene
D4Z93_11375  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
D4Z93_11370  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
D4Z93_11365  isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
D4Z93_03060  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D4Z93_07565  vorB; 3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
D4Z93_08935  vorB; 3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
D4Z93_01630  vorB; 3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
D4Z93_07560  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
D4Z93_08930  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
D4Z93_01635  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
D4Z93_07555  oxidoreductase [KO:K00177] [EC:1.2.7.3]
D4Z93_08925  pyruvate ferredoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
D4Z93_01640  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
D4Z93_07570  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
D4Z93_08940  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
D4Z93_01625  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
D4Z93_01535  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
D4Z93_01540  Fe-S-containing hydro-lyase [KO:K01678] [EC:4.2.1.2]
D4Z93_02505  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
D4Z93_11420  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
D4Z93_08295  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
D4Z93_11825  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
D4Z93_04995  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
D4Z93_08290  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
D4Z93_11830  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
D4Z93_05000  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
D4Z93_08305  pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
D4Z93_11815  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
D4Z93_04985  pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
D4Z93_08300  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
D4Z93_11820  ferredoxin [KO:K00171] [EC:1.2.7.1]
D4Z93_04990  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
D4Z93_09400  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
D4Z93_09485  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cfer00010  Glycolysis / Gluconeogenesis
cfer00061  Fatty acid biosynthesis
cfer00071  Fatty acid degradation
cfer00190  Oxidative phosphorylation
cfer00220  Arginine biosynthesis
cfer00250  Alanine, aspartate and glutamate metabolism
cfer00280  Valine, leucine and isoleucine degradation
cfer00350  Tyrosine metabolism
cfer00470  D-Amino acid metabolism
cfer00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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