KEGG   PATHWAY: chd00020
Entry
chd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Caldicellulosiruptor hydrothermalis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
chd00020  Citrate cycle (TCA cycle)
chd00020

Module
chd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:chd00020]
Other DBs
GO: 0006099
Organism
Caldicellulosiruptor hydrothermalis [GN:chd]
Gene
Calhy_0541  pyruvate carboxyltransferase [KO:K05942] [EC:2.3.3.3]
Calhy_2133  pyruvate carboxyltransferase [KO:K05942] [EC:2.3.3.3]
Calhy_2151  pyruvate carboxyltransferase [KO:K05942] [EC:2.3.3.3]
Calhy_2130  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Calhy_1966  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Calhy_1640  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Calhy_1639  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Calhy_1638  Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein [KO:K00177] [EC:1.2.7.3]
Calhy_1641  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Calhy_2602  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
Calhy_2159  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Calhy_2257  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Calhy_1967  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Calhy_1814  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Calhy_1042  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Calhy_1813  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Calhy_1816  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Calhy_1041  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Calhy_1815  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
chd00010  Glycolysis / Gluconeogenesis
chd00053  Ascorbate and aldarate metabolism
chd00061  Fatty acid biosynthesis
chd00190  Oxidative phosphorylation
chd00220  Arginine biosynthesis
chd00250  Alanine, aspartate and glutamate metabolism
chd00280  Valine, leucine and isoleucine degradation
chd00350  Tyrosine metabolism
chd00470  D-Amino acid metabolism
chd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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