KEGG   PATHWAY: chyl00020
Entry
chyl00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Clostridium hylemonae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
chyl00020  Citrate cycle (TCA cycle)
chyl00020

Module
chyl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:chyl00020]
chyl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:chyl00020]
chyl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:chyl00020]
Other DBs
GO: 0006099
Organism
Clostridium hylemonae [GN:chyl]
Gene
CE91St63_00840  citrate synthase [KO:K01647] [EC:2.3.3.1]
CE91St63_16890  HMGL-related enzyme [KO:K05942] [EC:2.3.3.3]
CE91St63_35300  hydratase [KO:K01681] [EC:4.2.1.3]
CE91St63_16910  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CE91St63_09410  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CE91St63_13400  acoL; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CE91St63_30780  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CE91St63_27740  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CE91St63_27750  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
CE91St63_00270  fumA; fumarate hydratase [KO:K01677] [EC:4.2.1.2]
CE91St63_00280  fumA'; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region [KO:K01678] [EC:4.2.1.2]
CE91St63_26280  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CE91St63_30790  pdhC; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
CE91St63_20500  pyruvate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
CE91St63_20530  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
CE91St63_07070  nifJ2; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
chyl00010  Glycolysis / Gluconeogenesis
chyl00053  Ascorbate and aldarate metabolism
chyl00061  Fatty acid biosynthesis
chyl00071  Fatty acid degradation
chyl00190  Oxidative phosphorylation
chyl00220  Arginine biosynthesis
chyl00250  Alanine, aspartate and glutamate metabolism
chyl00280  Valine, leucine and isoleucine degradation
chyl00350  Tyrosine metabolism
chyl00470  D-Amino acid metabolism
chyl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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