KEGG   PATHWAY: cic01100
Entry
cic01100                    Pathway                                
Name
Metabolic pathways - Citrus x clementina (clementine)
Class
Pathway map
cic01100  Metabolic pathways
cic01100

Module
cic_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:cic01100]
cic_M00002  Glycolysis, core module involving three-carbon compounds [PATH:cic01100]
cic_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cic01100]
cic_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:cic01100]
cic_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:cic01100]
cic_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:cic01100]
cic_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:cic01100]
cic_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cic01100]
cic_M00012  Glyoxylate cycle [PATH:cic01100]
cic_M00015  Proline biosynthesis, glutamate => proline [PATH:cic01100]
cic_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:cic01100]
cic_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:cic01100]
cic_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:cic01100]
cic_M00021  Cysteine biosynthesis, serine => cysteine [PATH:cic01100]
cic_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:cic01100]
cic_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:cic01100]
cic_M00026  Histidine biosynthesis, PRPP => histidine [PATH:cic01100]
cic_M00027  GABA (gamma-Aminobutyrate) shunt [PATH:cic01100]
cic_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:cic01100]
cic_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:cic01100]
cic_M00039  Monolignol biosynthesis, phenylalanine/tyrosine => monolignol [PATH:cic01100]
cic_M00040  Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:cic01100]
cic_M00044  Tyrosine degradation, tyrosine => homogentisate [PATH:cic01100]
cic_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:cic01100]
cic_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:cic01100]
cic_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:cic01100]
cic_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:cic01100]
cic_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:cic01100]
cic_M00055  N-glycan precursor biosynthesis [PATH:cic01100]
cic_M00073  N-glycan precursor trimming [PATH:cic01100]
cic_M00081  Pectin degradation [PATH:cic01100]
cic_M00082  Fatty acid biosynthesis, initiation [PATH:cic01100]
cic_M00083  Fatty acid biosynthesis, elongation [PATH:cic01100]
cic_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:cic01100]
cic_M00087  beta-Oxidation [PATH:cic01100]
cic_M00089  Triacylglycerol biosynthesis [PATH:cic01100]
cic_M00092  Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:cic01100]
cic_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:cic01100]
cic_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:cic01100]
cic_M00098  Acylglycerol degradation [PATH:cic01100]
cic_M00100  Sphingosine degradation [PATH:cic01100]
cic_M00112  Tocopherol/tocotorienol biosynthesis, homogentisate + phytyl/geranylgeranyl-PP => tocopherol/tocotorienol [PATH:cic01100]
cic_M00114  Ascorbate biosynthesis, plants, fructose-6P => ascorbate [PATH:cic01100]
cic_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:cic01100]
cic_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:cic01100]
cic_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:cic01100]
cic_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:cic01100]
cic_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:cic01100]
cic_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:cic01100]
cic_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:cic01100]
cic_M00132  Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH:cic01100]
cic_M00134  Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:cic01100]
cic_M00137  Flavanone biosynthesis, phenylalanine => naringenin [PATH:cic01100]
cic_M00138  Flavonoid biosynthesis, naringenin => pelargonidin [PATH:cic01100]
cic_M00168  CAM (Crassulacean acid metabolism), dark [PATH:cic01100]
cic_M00169  CAM (Crassulacean acid metabolism), light [PATH:cic01100]
cic_M00170  C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type [PATH:cic01100]
cic_M00171  C4-dicarboxylic acid cycle, NAD - malic enzyme type [PATH:cic01100]
cic_M00172  C4-dicarboxylic acid cycle, NADP - malic enzyme type [PATH:cic01100]
cic_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:cic01100]
cic_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cic01100]
cic_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:cic01100]
cic_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:cic01100]
cic_M00371  Castasterone biosynthesis, campesterol => castasterone [PATH:cic01100]
cic_M00372  Abscisic acid biosynthesis, beta-carotene => abscisic acid [PATH:cic01100]
cic_M00415  Fatty acid elongation in endoplasmic reticulum [PATH:cic01100]
cic_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:cic01100]
cic_M00527  Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:cic01100]
cic_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:cic01100]
cic_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:cic01100]
cic_M00555  Betaine biosynthesis, choline => betaine [PATH:cic01100]
cic_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:cic01100]
cic_M00621  Glycine cleavage system [PATH:cic01100]
cic_M00844  Arginine biosynthesis, ornithine => arginine [PATH:cic01100]
cic_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:cic01100]
cic_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:cic01100]
cic_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:cic01100]
cic_M00882  Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:cic01100]
cic_M00897  Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP [PATH:cic01100]
cic_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:cic01100]
cic_M00910  Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine [PATH:cic01100]
cic_M00916  Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:cic01100]
cic_M00917  Phytosterol biosynthesis, squalene 2,3-epoxide => campesterol/sitosterol [PATH:cic01100]
cic_M00927  Gibberellin A12 biosynthesis, GAPP => GA12 [PATH:cic01100]
cic_M00928  Gibberellin A4/A1 biosynthesis, GA12/GA53 => GA4/GA1 [PATH:cic01100]
cic_M00932  Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol [PATH:cic01100]
cic_M00933  Plastoquinone biosynthesis, homogentisate + solanesyl-PP => plastoquinol [PATH:cic01100]
cic_M00936  Melatonin biosynthesis, plants, tryptophan => serotonin => melatonin [PATH:cic01100]
cic_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:cic01100]
cic_M00970  Proline degradation, proline => glutamate [PATH:cic01100]
cic_M00972  Proline metabolism [PATH:cic01100]
Organism
Citrus x clementina (clementine) [GN:cic]
Related
pathway
cic00010  Glycolysis / Gluconeogenesis
cic00020  Citrate cycle (TCA cycle)
cic00030  Pentose phosphate pathway
cic00040  Pentose and glucuronate interconversions
cic00051  Fructose and mannose metabolism
cic00052  Galactose metabolism
cic00053  Ascorbate and aldarate metabolism
cic00061  Fatty acid biosynthesis
cic00062  Fatty acid elongation
cic00071  Fatty acid degradation
cic00073  Cutin, suberine and wax biosynthesis
cic00100  Steroid biosynthesis
cic00130  Ubiquinone and other terpenoid-quinone biosynthesis
cic00190  Oxidative phosphorylation
cic00195  Photosynthesis
cic00196  Photosynthesis - antenna proteins
cic00220  Arginine biosynthesis
cic00230  Purine metabolism
cic00232  Caffeine metabolism
cic00240  Pyrimidine metabolism
cic00250  Alanine, aspartate and glutamate metabolism
cic00260  Glycine, serine and threonine metabolism
cic00261  Monobactam biosynthesis
cic00270  Cysteine and methionine metabolism
cic00280  Valine, leucine and isoleucine degradation
cic00290  Valine, leucine and isoleucine biosynthesis
cic00300  Lysine biosynthesis
cic00310  Lysine degradation
cic00330  Arginine and proline metabolism
cic00340  Histidine metabolism
cic00350  Tyrosine metabolism
cic00360  Phenylalanine metabolism
cic00380  Tryptophan metabolism
cic00400  Phenylalanine, tyrosine and tryptophan biosynthesis
cic00410  beta-Alanine metabolism
cic00430  Taurine and hypotaurine metabolism
cic00440  Phosphonate and phosphinate metabolism
cic00450  Selenocompound metabolism
cic00460  Cyanoamino acid metabolism
cic00470  D-Amino acid metabolism
cic00480  Glutathione metabolism
cic00500  Starch and sucrose metabolism
cic00510  N-Glycan biosynthesis
cic00511  Other glycan degradation
cic00513  Various types of N-glycan biosynthesis
cic00514  Other types of O-glycan biosynthesis
cic00520  Amino sugar and nucleotide sugar metabolism
cic00531  Glycosaminoglycan degradation
cic00543  Exopolysaccharide biosynthesis
cic00561  Glycerolipid metabolism
cic00562  Inositol phosphate metabolism
cic00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
cic00564  Glycerophospholipid metabolism
cic00565  Ether lipid metabolism
cic00590  Arachidonic acid metabolism
cic00591  Linoleic acid metabolism
cic00592  alpha-Linolenic acid metabolism
cic00600  Sphingolipid metabolism
cic00601  Glycosphingolipid biosynthesis - lacto and neolacto series
cic00603  Glycosphingolipid biosynthesis - globo and isoglobo series
cic00604  Glycosphingolipid biosynthesis - ganglio series
cic00620  Pyruvate metabolism
cic00630  Glyoxylate and dicarboxylate metabolism
cic00640  Propanoate metabolism
cic00650  Butanoate metabolism
cic00660  C5-Branched dibasic acid metabolism
cic00670  One carbon pool by folate
cic00710  Carbon fixation by Calvin cycle
cic00730  Thiamine metabolism
cic00740  Riboflavin metabolism
cic00750  Vitamin B6 metabolism
cic00760  Nicotinate and nicotinamide metabolism
cic00770  Pantothenate and CoA biosynthesis
cic00780  Biotin metabolism
cic00785  Lipoic acid metabolism
cic00790  Folate biosynthesis
cic00860  Porphyrin metabolism
cic00900  Terpenoid backbone biosynthesis
cic00902  Monoterpenoid biosynthesis
cic00904  Diterpenoid biosynthesis
cic00905  Brassinosteroid biosynthesis
cic00906  Carotenoid biosynthesis
cic00908  Zeatin biosynthesis
cic00909  Sesquiterpenoid and triterpenoid biosynthesis
cic00910  Nitrogen metabolism
cic00920  Sulfur metabolism
cic00940  Phenylpropanoid biosynthesis
cic00941  Flavonoid biosynthesis
cic00942  Anthocyanin biosynthesis
cic00943  Isoflavonoid biosynthesis
cic00944  Flavone and flavonol biosynthesis
cic00950  Isoquinoline alkaloid biosynthesis
cic00960  Tropane, piperidine and pyridine alkaloid biosynthesis
cic00965  Betalain biosynthesis
cic00966  Glucosinolate biosynthesis
cic00996  Biosynthesis of various alkaloids
cic00999  Biosynthesis of various plant secondary metabolites
cic01040  Biosynthesis of unsaturated fatty acids
KO pathway
ko01100   
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