KEGG   PATHWAY: cic00030
Entry
cic00030                    Pathway                                
Name
Pentose phosphate pathway - Citrus x clementina (clementine)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cic00030  Pentose phosphate pathway
cic00030

Module
cic_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:cic00030]
cic_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:cic00030]
cic_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:cic00030]
cic_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:cic00030]
Other DBs
GO: 0006098
Organism
Citrus x clementina (clementine) [GN:cic]
Gene
CICLE_v10000722mg  hypothetical protein [KO:K01810] [EC:5.3.1.9]
CICLE_v10000603mg  hypothetical protein [KO:K01810] [EC:5.3.1.9]
CICLE_v10015153mg  hypothetical protein [KO:K00036] [EC:1.1.1.49 1.1.1.363]
CICLE_v10032440mg  hypothetical protein [KO:K01057] [EC:3.1.1.31]
CICLE_v10021162mg  hypothetical protein [KO:K01057] [EC:3.1.1.31]
CICLE_v10002054mg  hypothetical protein [KO:K01057] [EC:3.1.1.31]
CICLE_v10011597mg  hypothetical protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
CICLE_v10019859mg  hypothetical protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
CICLE_v10024185mg  hypothetical protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
CICLE_v10023851mg  hypothetical protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
CICLE_v10031373mg  hypothetical protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
CICLE_v10016576mg  hypothetical protein [KO:K01783] [EC:5.1.3.1]
CICLE_v10021564mg  hypothetical protein [KO:K01783] [EC:5.1.3.1]
CICLE_v10033603mg  hypothetical protein [KO:K00615] [EC:2.2.1.1]
CICLE_v10018991mg  hypothetical protein [KO:K00615] [EC:2.2.1.1]
CICLE_v10004979mg  hypothetical protein [KO:K00616] [EC:2.2.1.2]
CICLE_v10020501mg  hypothetical protein [KO:K00616] [EC:2.2.1.2]
CICLE_v10002135mg  hypothetical protein [KO:K01807] [EC:5.3.1.6]
CICLE_v10016309mg  hypothetical protein [KO:K01807] [EC:5.3.1.6]
CICLE_v10010606mg  hypothetical protein [KO:K01807] [EC:5.3.1.6]
CICLE_v10015984mg  hypothetical protein [KO:K01807] [EC:5.3.1.6]
CICLE_v10020632mg  hypothetical protein [KO:K00852] [EC:2.7.1.15]
CICLE_v10014721mg  hypothetical protein [KO:K01835] [EC:5.4.2.2]
CICLE_v10004539mg  hypothetical protein [KO:K01835] [EC:5.4.2.2]
CICLE_v10031694mg  hypothetical protein [KO:K00948] [EC:2.7.6.1]
CICLE_v10031791mg  hypothetical protein [KO:K00948] [EC:2.7.6.1]
CICLE_v10008091mg  hypothetical protein [KO:K00131] [EC:1.2.1.9]
CICLE_v10008100mg  hypothetical protein [KO:K00131] [EC:1.2.1.9]
CICLE_v10032834mg  hypothetical protein [KO:K00851] [EC:2.7.1.12]
CICLE_v10008762mg  hypothetical protein [KO:K01623] [EC:4.1.2.13]
CICLE_v10012049mg  hypothetical protein [KO:K01623] [EC:4.1.2.13]
CICLE_v10017877mg  hypothetical protein [KO:K01623] [EC:4.1.2.13]
CICLE_v10028594mg  hypothetical protein [KO:K01623] [EC:4.1.2.13]
CICLE_v10028540mg  hypothetical protein [KO:K03841] [EC:3.1.3.11]
CICLE_v10011855mg  hypothetical protein [KO:K03841] [EC:3.1.3.11]
CICLE_v10001734mg  hypothetical protein [KO:K03841] [EC:3.1.3.11]
CICLE_v10004702mg  hypothetical protein [KO:K00850] [EC:2.7.1.11]
CICLE_v10015031mg  hypothetical protein [KO:K00850] [EC:2.7.1.11]
CICLE_v10007886mg  hypothetical protein [KO:K00850] [EC:2.7.1.11]
CICLE_v10025337mg  hypothetical protein [KO:K00850] [EC:2.7.1.11]
CICLE_v10025255mg  hypothetical protein [KO:K00850] [EC:2.7.1.11]
CICLE_v10008181mg  hypothetical protein [KO:K00850] [EC:2.7.1.11]
CICLE_v10017788mg  hypothetical protein [KO:K00895] [EC:2.7.1.90]
CICLE_v10014750mg  hypothetical protein [KO:K00895] [EC:2.7.1.90]
CICLE_v10000595mg  hypothetical protein [KO:K00895] [EC:2.7.1.90]
CICLE_v10014760mg  hypothetical protein [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
cic00010  Glycolysis / Gluconeogenesis
cic00040  Pentose and glucuronate interconversions
cic00052  Galactose metabolism
cic00230  Purine metabolism
cic00240  Pyrimidine metabolism
cic00340  Histidine metabolism
cic00630  Glyoxylate and dicarboxylate metabolism
cic00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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