KEGG   PATHWAY: cic00020
Entry
cic00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Citrus x clementina (clementine)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cic00020  Citrate cycle (TCA cycle)
cic00020

Module
cic_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cic00020]
cic_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cic00020]
cic_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cic00020]
Other DBs
GO: 0006099
Organism
Citrus x clementina (clementine) [GN:cic]
Gene
CICLE_v10031423mg  hypothetical protein [KO:K01647] [EC:2.3.3.1]
CICLE_v10014944mg  hypothetical protein [KO:K01647] [EC:2.3.3.1]
CICLE_v10004572mg  hypothetical protein [KO:K01648] [EC:2.3.3.8]
CICLE_v10031633mg  hypothetical protein [KO:K01648] [EC:2.3.3.8]
CICLE_v10013702mg  hypothetical protein [KO:K01648] [EC:2.3.3.8]
CICLE_v10014140mg  hypothetical protein [KO:K01681] [EC:4.2.1.3]
CICLE_v10024840mg  hypothetical protein [KO:K01681] [EC:4.2.1.3]
CICLE_v10007338mg  hypothetical protein [KO:K01681] [EC:4.2.1.3]
CICLE_v100148161m  hypothetical protein [KO:K00031] [EC:1.1.1.42]
CICLE_v10001314mg  hypothetical protein [KO:K00031] [EC:1.1.1.42]
CICLE_v10005058mg  hypothetical protein [KO:K00031] [EC:1.1.1.42]
CICLE_v10011936mg  hypothetical protein [KO:K00030] [EC:1.1.1.41]
CICLE_v10025889mg  hypothetical protein [KO:K00030] [EC:1.1.1.41]
CICLE_v10028714mg  hypothetical protein [KO:K00030] [EC:1.1.1.41]
CICLE_v10030605mg  hypothetical protein [KO:K00164] [EC:1.2.4.2]
CICLE_v10018656mg  hypothetical protein [KO:K00164] [EC:1.2.4.2]
CICLE_v10008189mg  hypothetical protein [KO:K00658] [EC:2.3.1.61]
CICLE_v10017966mg  hypothetical protein [KO:K00658] [EC:2.3.1.61]
CICLE_v10004547mg  hypothetical protein [KO:K00382] [EC:1.8.1.4]
CICLE_v10004793mg  hypothetical protein [KO:K00382] [EC:1.8.1.4]
CICLE_v10020931mg  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CICLE_v10032075mg  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CICLE_v10020300mg  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CICLE_v10025149mg  hypothetical protein [KO:K00234] [EC:1.3.5.1]
CICLE_v10016181mg  hypothetical protein [KO:K00235] [EC:1.3.5.1]
CICLE_v10027338mg  hypothetical protein [KO:K00235] [EC:1.3.5.1]
CICLE_v10019838mg  hypothetical protein [KO:K01679] [EC:4.2.1.2]
CICLE_v10005394mg  hypothetical protein [KO:K00025] [EC:1.1.1.37]
CICLE_v10021075mg  hypothetical protein [KO:K00025] [EC:1.1.1.37]
CICLE_v10008562mg  hypothetical protein [KO:K00026] [EC:1.1.1.37]
CICLE_v10028730mg  hypothetical protein [KO:K00026] [EC:1.1.1.37]
CICLE_v10025945mg  hypothetical protein [KO:K00026] [EC:1.1.1.37]
CICLE_v10016114mg  hypothetical protein [KO:K00026] [EC:1.1.1.37]
CICLE_v10020378mg  hypothetical protein [KO:K00026] [EC:1.1.1.37]
CICLE_v10000510mg  hypothetical protein [KO:K01610] [EC:4.1.1.49]
CICLE_v10025088mg  hypothetical protein [KO:K01610] [EC:4.1.1.49]
CICLE_v10031744mg  hypothetical protein [KO:K00161] [EC:1.2.4.1]
CICLE_v10020210mg  hypothetical protein [KO:K00161] [EC:1.2.4.1]
CICLE_v10015440mg  hypothetical protein [KO:K00162] [EC:1.2.4.1]
CICLE_v10031662mg  hypothetical protein [KO:K00162] [EC:1.2.4.1]
CICLE_v10030940mg  hypothetical protein [KO:K00627] [EC:2.3.1.12]
CICLE_v100337541m  hypothetical protein [KO:K00627] [EC:2.3.1.12]
CICLE_v10001084mg  hypothetical protein [KO:K00627] [EC:2.3.1.12]
CICLE_v10025308mg  hypothetical protein [KO:K00627] [EC:2.3.1.12]
CICLE_v10031397mg  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cic00010  Glycolysis / Gluconeogenesis
cic00053  Ascorbate and aldarate metabolism
cic00061  Fatty acid biosynthesis
cic00062  Fatty acid elongation
cic00071  Fatty acid degradation
cic00190  Oxidative phosphorylation
cic00220  Arginine biosynthesis
cic00250  Alanine, aspartate and glutamate metabolism
cic00280  Valine, leucine and isoleucine degradation
cic00350  Tyrosine metabolism
cic00470  D-Amino acid metabolism
cic00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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