KEGG   PATHWAY: cjb00020
Entry
cjb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter jejuni subsp. jejuni NCTC 11168-BN148
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cjb00020  Citrate cycle (TCA cycle)
cjb00020

Module
cjb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cjb00020]
cjb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cjb00020]
cjb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cjb00020]
Other DBs
GO: 0006099
Organism
Campylobacter jejuni subsp. jejuni NCTC 11168-BN148 [GN:cjb]
Gene
BN148_1682c  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
BN148_0835c  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BN148_0531  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BN148_0536  oorA; 2-oxoglutarate-acceptor oxidoreductase subunit OorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BN148_0537  oorB; 2-oxoglutarate-acceptor oxidoreductase subunit OorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BN148_0538  oorC; 2-oxoglutarate-acceptor oxidoreductase subunit OorC [KO:K00177] [EC:1.2.7.3]
BN148_0535  oorD; 2-oxoglutarate-acceptor oxidoreductase subunit OorD [KO:K00176] [EC:1.2.7.3]
BN148_0534  sucD; sucD [KO:K01902] [EC:6.2.1.5]
BN148_0533  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
BN148_0438  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BN148_0439  sdhC; succinate dehydrogenase subunit C [KO:K00241]
BN148_0409  frdA; fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
BN148_0410  frdB; fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
BN148_0408  frdC; fumarate reductase cytochrome b-556 subunit [KO:K25996]
BN148_1364c  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BN148_0532  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BN148_0393c  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BN148_1037c  pycA; acetyl-CoA carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
BN148_0933c  pycB; pycB [KO:K01960] [EC:6.4.1.1]
BN148_0932c  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BN148_1476c  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cjb00010  Glycolysis / Gluconeogenesis
cjb00061  Fatty acid biosynthesis
cjb00190  Oxidative phosphorylation
cjb00220  Arginine biosynthesis
cjb00250  Alanine, aspartate and glutamate metabolism
cjb00280  Valine, leucine and isoleucine degradation
cjb00350  Tyrosine metabolism
cjb00470  D-Amino acid metabolism
cjb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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