KEGG   PATHWAY: cjd00020
Entry
cjd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter jejuni subsp. doylei 269.97
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cjd00020  Citrate cycle (TCA cycle)
cjd00020

Module
cjd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cjd00020]
cjd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cjd00020]
cjd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cjd00020]
Other DBs
GO: 0006099
Organism
Campylobacter jejuni subsp. doylei 269.97 [GN:cjd]
Gene
JJD26997_2055  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
JJD26997_0985  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
JJD26997_1179  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
JJD26997_1399  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
JJD26997_1394  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JJD26997_1393  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JJD26997_1392  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
JJD26997_1395  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
JJD26997_1396  sucD; succinyl-CoA synthase, alpha subunit [KO:K01902] [EC:6.2.1.5]
JJD26997_1397  sucC; succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
JJD26997_1548  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
JJD26997_1547  frdB; fumarate reductase, iron-sulfur protein subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
JJD26997_1549  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
JJD26997_0285  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
JJD26997_1398  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JJD26997_1565  putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
JJD26997_0745  accC-1; acetyl-CoA carboxylase, biotin carboxylase [KO:K01959] [EC:6.4.1.1]
JJD26997_0881  putative oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
JJD26997_0882  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
JJD26997_1823  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cjd00010  Glycolysis / Gluconeogenesis
cjd00061  Fatty acid biosynthesis
cjd00190  Oxidative phosphorylation
cjd00220  Arginine biosynthesis
cjd00250  Alanine, aspartate and glutamate metabolism
cjd00280  Valine, leucine and isoleucine degradation
cjd00350  Tyrosine metabolism
cjd00470  D-Amino acid metabolism
cjd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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