KEGG   PATHWAY: cjj00020
Entry
cjj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter jejuni subsp. jejuni 81-176
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cjj00020  Citrate cycle (TCA cycle)
cjj00020

Module
cjj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cjj00020]
cjj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cjj00020]
cjj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cjj00020]
Other DBs
GO: 0006099
Organism
Campylobacter jejuni subsp. jejuni 81-176 [GN:cjj]
Gene
CJJ81176_1675  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CJJ81176_0852  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CJJ81176_0556  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
CJJ81176_0561  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CJJ81176_0562  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CJJ81176_0563  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
CJJ81176_0560  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
CJJ81176_0559  sucD; succinyl-CoA synthase, alpha subunit [KO:K01902] [EC:6.2.1.5]
CJJ81176_0558  sucC; succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
CJJ81176_0464  sdhB; succinate dehydrogenase, iron-sulfur protein subunit [KO:K00240] [EC:1.3.5.1]
CJJ81176_0465  sdhC; succinate dehydrogenase, C subunit [KO:K00241]
CJJ81176_0433  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
CJJ81176_0434  frdB; fumarate reductase, iron-sulfur protein subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
CJJ81176_0432  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
CJJ81176_1366  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CJJ81176_0557  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CJJ81176_0416  malate:quinone oxidoreductase, putative [KO:K00116] [EC:1.1.5.4]
CJJ81176_1056  accC-1; acetyl-CoA carboxylase, biotin carboxylase [KO:K01959] [EC:6.4.1.1]
CJJ81176_0940  oxaloacetate decarboxylase, alpha subunit, putative [KO:K01960] [EC:6.4.1.1]
CJJ81176_0939  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CJJ81176_1469  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cjj00010  Glycolysis / Gluconeogenesis
cjj00061  Fatty acid biosynthesis
cjj00190  Oxidative phosphorylation
cjj00220  Arginine biosynthesis
cjj00250  Alanine, aspartate and glutamate metabolism
cjj00280  Valine, leucine and isoleucine degradation
cjj00350  Tyrosine metabolism
cjj00470  D-Amino acid metabolism
cjj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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