KEGG   PATHWAY: cjl00020
Entry
cjl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter jejuni subsp. jejuni 00-1597
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cjl00020  Citrate cycle (TCA cycle)
cjl00020

Module
cjl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cjl00020]
cjl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cjl00020]
cjl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cjl00020]
Other DBs
GO: 0006099
Organism
Campylobacter jejuni subsp. jejuni 00-1597 [GN:cjl]
Gene
PJ17_08845  citrate synthase [KO:K01647] [EC:2.3.3.1]
PJ17_04040  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PJ17_02570  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PJ17_02595  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PJ17_02600  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PJ17_02605  oorC; 2-oxoglutarate:acceptor oxidoreductase [KO:K00177] [EC:1.2.7.3]
PJ17_02590  oorD; 2-oxoglutarate:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
PJ17_02585  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
PJ17_02580  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
PJ17_02160  (2Fe-2S)-binding protein [KO:K00240] [EC:1.3.5.1]
PJ17_02165  heterodisulfide reductase subunit B [KO:K00241]
PJ17_01990  fumarate reductase [KO:K00233] [EC:1.3.5.1 7.1.1.12]
PJ17_01995  frdB; fumarate reductase [KO:K25995] [EC:1.3.5.1 7.1.1.12]
PJ17_01985  fumarate reductase [KO:K25996]
PJ17_07215  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PJ17_02575  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PJ17_01910  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PJ17_05330  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
PJ17_04505  biotin attachment protein [KO:K01960] [EC:6.4.1.1]
PJ17_04500  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PJ17_07725  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cjl00010  Glycolysis / Gluconeogenesis
cjl00061  Fatty acid biosynthesis
cjl00190  Oxidative phosphorylation
cjl00220  Arginine biosynthesis
cjl00250  Alanine, aspartate and glutamate metabolism
cjl00280  Valine, leucine and isoleucine degradation
cjl00350  Tyrosine metabolism
cjl00470  D-Amino acid metabolism
cjl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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