KEGG   PATHWAY: cjq00020
Entry
cjq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter jejuni subsp. jejuni 35925B2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cjq00020  Citrate cycle (TCA cycle)
cjq00020

Module
cjq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cjq00020]
cjq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cjq00020]
cjq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cjq00020]
Other DBs
GO: 0006099
Organism
Campylobacter jejuni subsp. jejuni 35925B2 [GN:cjq]
Gene
UC78_1617  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
UC78_0796  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
UC78_0515  icd2; Isocitrate dehydrogenase [NADP] 2 [KO:K00031] [EC:1.1.1.42]
UC78_0520  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
UC78_0521  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
UC78_0522  2-oxoglutarate-acceptor oxidoreductase subunit OorC [KO:K00177] [EC:1.2.7.3]
UC78_0519  2-oxoglutarate-acceptor oxidoreductase subunit OorD [KO:K00176] [EC:1.2.7.3]
UC78_0518  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
UC78_0517  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
UC78_0422  frdB_2; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
UC78_0423  Cysteine-rich domain protein [KO:K00241]
UC78_0395  frdA_1; Fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
UC78_0396  frdB_1; Fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
UC78_0394  frdC; Fumarate reductase cytochrome b subunit [KO:K25996]
UC78_1312  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
UC78_0516  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
UC78_0379  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
UC78_0994  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01959] [EC:6.4.1.1]
UC78_0887  cfiA; 2-oxoglutarate carboxylase large subunit [KO:K01960] [EC:6.4.1.1]
UC78_0886  pckA; Phosphoenolpyruvate carboxykinase ATP [KO:K01610] [EC:4.1.1.49]
UC78_1408  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cjq00010  Glycolysis / Gluconeogenesis
cjq00061  Fatty acid biosynthesis
cjq00190  Oxidative phosphorylation
cjq00220  Arginine biosynthesis
cjq00250  Alanine, aspartate and glutamate metabolism
cjq00280  Valine, leucine and isoleucine degradation
cjq00350  Tyrosine metabolism
cjq00470  D-Amino acid metabolism
cjq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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