KEGG   PATHWAY: cjv00020
Entry
cjv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter jejuni subsp. jejuni MTVDSCj20
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cjv00020  Citrate cycle (TCA cycle)
cjv00020

Module
cjv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cjv00020]
cjv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cjv00020]
cjv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cjv00020]
Other DBs
GO: 0006099
Organism
Campylobacter jejuni subsp. jejuni MTVDSCj20 [GN:cjv]
Gene
MTVDSCj20_1644  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MTVDSCj20_0840  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MTVDSCj20_0548  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
MTVDSCj20_0553  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MTVDSCj20_0554  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MTVDSCj20_0555  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
MTVDSCj20_0552  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
MTVDSCj20_0551  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
MTVDSCj20_0550  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
MTVDSCj20_0412  mfrB; methylmenaquinol:fumarate reductase, MfrB subunit [KO:K00240] [EC:1.3.5.1]
MTVDSCj20_0413  mfrE; methylmenaquinol:fumarate reductase, MfrE subunit [KO:K00241]
MTVDSCj20_0379  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
MTVDSCj20_0380  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
MTVDSCj20_0378  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
MTVDSCj20_1346  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
MTVDSCj20_0549  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
MTVDSCj20_0363  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
MTVDSCj20_1039  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
MTVDSCj20_0929  pycB; pyruvate carboxylase, subunit B [KO:K01960] [EC:6.4.1.1]
MTVDSCj20_0928  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MTVDSCj20_1441  por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cjv00010  Glycolysis / Gluconeogenesis
cjv00061  Fatty acid biosynthesis
cjv00190  Oxidative phosphorylation
cjv00220  Arginine biosynthesis
cjv00250  Alanine, aspartate and glutamate metabolism
cjv00280  Valine, leucine and isoleucine degradation
cjv00350  Tyrosine metabolism
cjv00470  D-Amino acid metabolism
cjv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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