KEGG   PATHWAY: ckl00020
Entry
ckl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Clostridium kluyveri DSM 555
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ckl00020  Citrate cycle (TCA cycle)
ckl00020

Module
ckl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ckl00020]
ckl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ckl00020]
ckl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ckl00020]
Other DBs
GO: 0006099
Organism
Clostridium kluyveri DSM 555 [GN:ckl]
Gene
CKL_0044  Predicted citrate synthase [KO:K01647] [EC:2.3.3.1]
CKL_0973  2-isopropylmalate synthase-related protein [KO:K05942] [EC:2.3.3.3]
CKL_0974  Aconitase-related protein [KO:K01681] [EC:4.2.1.3]
CKL_0546  idh; Idh [KO:K00031] [EC:1.1.1.42]
CKL_2268  lpdA; LpdA [KO:K00382] [EC:1.8.1.4]
CKL_1769  bfmBC; BfmBC [KO:K00382] [EC:1.8.1.4]
CKL_3016  cat1; Cat1 [KO:K18118] [EC:2.8.3.18]
CKL_0774  Predicted succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
CKL_0303  fumA; FumA [KO:K01677] [EC:4.2.1.2]
CKL_0304  fumB; FumB [KO:K01678] [EC:4.2.1.2]
CKL_0447  pyc; Pyc [KO:K01958] [EC:6.4.1.1]
CKL_2699  pck; Pck [KO:K01610] [EC:4.1.1.49]
CKL_2269  pdhC; PdhC [KO:K00627] [EC:2.3.1.12]
CKL_2997  porA; PorA [KO:K00169] [EC:1.2.7.1]
CKL_2996  porB; PorB [KO:K00170] [EC:1.2.7.1]
CKL_2999  porC; PorC [KO:K00172] [EC:1.2.7.1]
CKL_2998  porD; PorD [KO:K00171] [EC:1.2.7.1]
CKL_3337  Automatic annotation [KO:K03737] [EC:1.2.7.1 1.2.7.-]
CKL_2138  Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ckl00010  Glycolysis / Gluconeogenesis
ckl00053  Ascorbate and aldarate metabolism
ckl00061  Fatty acid biosynthesis
ckl00071  Fatty acid degradation
ckl00190  Oxidative phosphorylation
ckl00220  Arginine biosynthesis
ckl00250  Alanine, aspartate and glutamate metabolism
ckl00280  Valine, leucine and isoleucine degradation
ckl00350  Tyrosine metabolism
ckl00470  D-Amino acid metabolism
ckl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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