KEGG   PATHWAY: clb00020
Entry
clb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Clostridium sp. BNL1100
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
clb00020  Citrate cycle (TCA cycle)
clb00020

Module
clb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:clb00020]
clb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:clb00020]
Other DBs
GO: 0006099
Organism
Clostridium sp. BNL1100 [GN:clb]
Gene
Clo1100_0636  citrate synthase [KO:K01647] [EC:2.3.3.1]
Clo1100_2583  isopropylmalate/homocitrate/citramalate synthase [KO:K05942] [EC:2.3.3.3]
Clo1100_2582  aconitate hydratase, putative, Aquifex type [KO:K01681] [EC:4.2.1.3]
Clo1100_0631  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Clo1100_1589  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Clo1100_1590  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Clo1100_1591  2-oxoacid:ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Clo1100_1588  hypothetical protein [KO:K00176] [EC:1.2.7.3]
Clo1100_0817  hydro-lyase, Fe-S type, tartrate/fumarate subfamily [KO:K01677] [EC:4.2.1.2]
Clo1100_0818  hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily [KO:K01678] [EC:4.2.1.2]
Clo1100_0221  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Clo1100_4034  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Clo1100_4033  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Clo1100_4036  2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [KO:K00172] [EC:1.2.7.1]
Clo1100_4035  2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [KO:K00171] [EC:1.2.7.1]
Clo1100_2895  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Clo1100_0018  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
clb00010  Glycolysis / Gluconeogenesis
clb00061  Fatty acid biosynthesis
clb00071  Fatty acid degradation
clb00190  Oxidative phosphorylation
clb00220  Arginine biosynthesis
clb00250  Alanine, aspartate and glutamate metabolism
clb00280  Valine, leucine and isoleucine degradation
clb00350  Tyrosine metabolism
clb00470  D-Amino acid metabolism
clb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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