KEGG   PATHWAY: clx00020
Entry
clx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter lanienae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
clx00020  Citrate cycle (TCA cycle)
clx00020

Module
clx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:clx00020]
clx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:clx00020]
clx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:clx00020]
Other DBs
GO: 0006099
Organism
Campylobacter lanienae [GN:clx]
Gene
CLAN_0045  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CLAN_1018  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CLAN_0851  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
CLAN_0848  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CLAN_0847  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CLAN_0846  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
CLAN_0849  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
CLAN_0745  acyl-CoA hydrolase/transferase [KO:K18118] [EC:2.8.3.18]
CLAN_1062  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
CLAN_1063  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
CLAN_1061  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
CLAN_1095  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CLAN_0850  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
CLAN_0419  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
CLAN_1036  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
CLAN_1120  pycB; pyruvate carboxylase, subunit B [KO:K01960] [EC:6.4.1.1]
CLAN_1121  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CLAN_1290  por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
clx00010  Glycolysis / Gluconeogenesis
clx00061  Fatty acid biosynthesis
clx00190  Oxidative phosphorylation
clx00220  Arginine biosynthesis
clx00250  Alanine, aspartate and glutamate metabolism
clx00280  Valine, leucine and isoleucine degradation
clx00350  Tyrosine metabolism
clx00470  D-Amino acid metabolism
clx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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