KEGG   PATHWAY: cmed00020
Entry
cmed00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Caminibacter mediatlanticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cmed00020  Citrate cycle (TCA cycle)
cmed00020

Module
cmed_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cmed00020]
cmed_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cmed00020]
cmed_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cmed00020]
Other DBs
GO: 0006099
Organism
Caminibacter mediatlanticus [GN:cmed]
Gene
FE773_04940  ATP citrate synthase [KO:K15230] [EC:2.3.3.8]
FE773_04935  ATPase [KO:K15231] [EC:2.3.3.8]
FE773_02120  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FE773_05155  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FE773_05190  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FE773_05195  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FE773_05200  oorC; 2-oxoglutarate:acceptor oxidoreductase [KO:K00177] [EC:1.2.7.3]
FE773_05185  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
FE773_05180  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FE773_05175  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FE773_07265  FAD-dependent oxidoreductase [KO:K00239] [EC:1.3.5.1]
FE773_06905  FAD-dependent oxidoreductase [KO:K00239] [EC:1.3.5.1]
FE773_06900  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FE773_06895  heterodisulfide reductase subunit B [KO:K00241]
FE773_05165  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
FE773_05170  Fe-S-containing hydro-lyase [KO:K01678] [EC:4.2.1.2]
FE773_05160  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FE773_05640  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
FE773_05635  biotin/lipoyl-binding protein [KO:K01960] [EC:6.4.1.1]
FE773_00535  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FE773_03130  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
FE773_03135  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
FE773_03120  pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
FE773_03125  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cmed00010  Glycolysis / Gluconeogenesis
cmed00053  Ascorbate and aldarate metabolism
cmed00061  Fatty acid biosynthesis
cmed00190  Oxidative phosphorylation
cmed00220  Arginine biosynthesis
cmed00250  Alanine, aspartate and glutamate metabolism
cmed00280  Valine, leucine and isoleucine degradation
cmed00350  Tyrosine metabolism
cmed00470  D-Amino acid metabolism
cmed00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system