KEGG   PATHWAY: cmr00030
Entry
cmr00030                    Pathway                                
Name
Pentose phosphate pathway - Cyclobacterium marinum
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cmr00030  Pentose phosphate pathway
cmr00030

Module
cmr_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:cmr00030]
cmr_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:cmr00030]
cmr_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:cmr00030]
Other DBs
GO: 0006098
Organism
Cyclobacterium marinum [GN:cmr]
Gene
Cycma_0379  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
Cycma_3806  Domain of unknown function DUF2394 [KO:K07404] [EC:3.1.1.31]
Cycma_2862  Domain of unknown function DUF2394 [KO:K07404] [EC:3.1.1.31]
Cycma_4173  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Cycma_4253  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
Cycma_4614  Transketolase domain-containing protein [KO:K00615] [EC:2.2.1.1]
Cycma_4615  Transketolase central region [KO:K00615] [EC:2.2.1.1]
Cycma_0309  transaldolase [KO:K00616] [EC:2.2.1.2]
Cycma_1100  sugar-phosphate isomerase, RpiB/LacA/LacB family [KO:K01808] [EC:5.3.1.6]
Cycma_4041  Orotidine 5'-phosphate decarboxylase [KO:K08093] [EC:4.1.2.43]
Cycma_1729  Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
Cycma_3197  ribokinase [KO:K00852] [EC:2.7.1.15]
Cycma_4984  phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I [KO:K01835] [EC:5.4.2.2]
Cycma_3013  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Cycma_4545  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Cycma_4087  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Cycma_4410  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Cycma_0018  PQQ-dependent enzyme [KO:K00117] [EC:1.1.5.2]
Cycma_4222  PQQ-dependent enzyme [KO:K00117] [EC:1.1.5.2]
Cycma_3692  PQQ-dependent enzyme [KO:K00117] [EC:1.1.5.2]
Cycma_4634  heme-binding protein [KO:K00117] [EC:1.1.5.2]
Cycma_4038  SMP-30/Gluconolaconase/LRE-like region-containing protein [KO:K01053] [EC:3.1.1.17]
Cycma_2443  SMP-30/Gluconolaconase/LRE-like region-containing protein [KO:K01053] [EC:3.1.1.17]
Cycma_3932  SMP-30/Gluconolaconase/LRE-like region-containing protein [KO:K01053] [EC:3.1.1.17]
Cycma_1154  SMP-30/Gluconolaconase/LRE-like region-containing protein [KO:K01053] [EC:3.1.1.17]
Cycma_1988  SMP-30/Gluconolaconase/LRE-like region-containing protein [KO:K01053] [EC:3.1.1.17]
Cycma_4089  PfkB domain protein [KO:K00874] [EC:2.7.1.45]
Cycma_1976  aminotransferase class V [KO:K17468] [EC:4.3.1.29]
Cycma_2046  selenocysteine synthase (seryl-tRNASer selenium transferase)-like protein [KO:K17468] [EC:4.3.1.29]
Cycma_2270  selenocysteine synthase (seryl-tRNASer selenium transferase)-like protein [KO:K17468] [EC:4.3.1.29]
Cycma_3896  aminotransferase class V [KO:K17468] [EC:4.3.1.29]
Cycma_4537  deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase [KO:K11645] [EC:4.1.2.13]
Cycma_5064  fructose-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
Cycma_1826  Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
Cycma_0525  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Cycma_3720  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Cycma_4556  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
cmr00010  Glycolysis / Gluconeogenesis
cmr00040  Pentose and glucuronate interconversions
cmr00052  Galactose metabolism
cmr00230  Purine metabolism
cmr00240  Pyrimidine metabolism
cmr00340  Histidine metabolism
cmr00630  Glyoxylate and dicarboxylate metabolism
cmr00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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