KEGG   PATHWAY: cpap00630
Entry
cpap00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Carica papaya (papaya)
Class
Metabolism; Carbohydrate metabolism
Pathway map
cpap00630  Glyoxylate and dicarboxylate metabolism
cpap00630

Module
cpap_M00012  Glyoxylate cycle [PATH:cpap00630]
cpap_M00532  Photorespiration [PATH:cpap00630]
cpap_M00621  Glycine cleavage system [PATH:cpap00630]
Other DBs
GO: 0046487 0043648
Organism
Carica papaya (papaya) [GN:cpap]
Gene
110821578  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
110812971  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
110813640  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
110823057  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
110815859  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
110823592  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
110809086  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
110808921  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
110818995  LOW QUALITY PROTEIN: malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
110806978  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
110815011  citrate synthase 2, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
110811504  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
110820756  aconitate hydratase 3, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
110822198  LOW QUALITY PROTEIN: aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
110817825  probable acetyl-CoA acetyltransferase, cytosolic 2 [KO:K00626] [EC:2.3.1.9]
110806540  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
110812510  peroxisomal (S)-2-hydroxy-acid oxidase [KO:K11517] [EC:1.1.3.15]
110819653  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
110812644  catalase isozyme 1-like [KO:K03781] [EC:1.11.1.6]
110822434  catalase isozyme 2-like [KO:K03781] [EC:1.11.1.6]
110818048  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
110815690  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
110819928  glyoxylate/hydroxypyruvate reductase A HPR2-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
110821743  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
110818455  glyoxylate/succinic semialdehyde reductase 2, chloroplastic-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
110818965  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
110811479  phosphoglycolate phosphatase 1B, chloroplastic-like isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
110817829  LOW QUALITY PROTEIN: phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
5878390  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
110826094  ribulose bisphosphate carboxylase small chain, chloroplastic-like isoform X1 [KO:K01602] [EC:4.1.1.39]
110814144  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
110824084  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
110824180  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
110815628  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
110817151  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
110822870  LOW QUALITY PROTEIN: ferredoxin-dependent glutamate synthase, chloroplastic-like [KO:K00284] [EC:1.4.7.1]
110826001  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
110809751  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
110819846  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
110823127  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
110817445  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
110807952  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
110807312  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
110809082  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
110815184  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
110822049  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
110808051  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
110815252  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
110808357  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
110808772  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
110811414  glycine cleavage system H protein 1, mitochondrial [KO:K02437]
110821195  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
110816325  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
110817554  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
110822213  uncharacterized protein LOC110822213 isoform X1 [KO:K01455] [EC:3.5.1.49]
110810354  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
110812774  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
cpap00010  Glycolysis / Gluconeogenesis
cpap00020  Citrate cycle (TCA cycle)
cpap00030  Pentose phosphate pathway
cpap00053  Ascorbate and aldarate metabolism
cpap00071  Fatty acid degradation
cpap00230  Purine metabolism
cpap00250  Alanine, aspartate and glutamate metabolism
cpap00260  Glycine, serine and threonine metabolism
cpap00620  Pyruvate metabolism
cpap00710  Carbon fixation by Calvin cycle
cpap00750  Vitamin B6 metabolism
cpap00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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