KEGG   PATHWAY: cpin00020
Entry
cpin00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter pinnipediorum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cpin00020  Citrate cycle (TCA cycle)
cpin00020

Module
cpin_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cpin00020]
cpin_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cpin00020]
cpin_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cpin00020]
Other DBs
GO: 0006099
Organism
Campylobacter pinnipediorum [GN:cpin]
Gene
CPIN18020_1197  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CPIN18020_0156  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CPIN18020_0802  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
CPIN18020_0805  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
CPIN18020_0804  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
CPIN18020_1280  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
CPIN18020_1281  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
CPIN18020_1279  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
CPIN18020_0082  tartrate dehydratase/fumarate hydratase, alpha subunit [KO:K01677] [EC:4.2.1.2]
CPIN18020_0083  tartrate dehydratase/fumarate hydratase, beta subunit [KO:K01678] [EC:4.2.1.2]
CPIN18020_0803  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
CPIN18020_1389  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
CPIN18020_1303  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
CPIN18020_1009  oadA; oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
CPIN18020_1007  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CPIN18020_1501  por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cpin00010  Glycolysis / Gluconeogenesis
cpin00053  Ascorbate and aldarate metabolism
cpin00061  Fatty acid biosynthesis
cpin00190  Oxidative phosphorylation
cpin00220  Arginine biosynthesis
cpin00250  Alanine, aspartate and glutamate metabolism
cpin00280  Valine, leucine and isoleucine degradation
cpin00350  Tyrosine metabolism
cpin00470  D-Amino acid metabolism
cpin00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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