KEGG   PATHWAY: cpro00020
Entry
cpro00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Anaerotignum propionicum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cpro00020  Citrate cycle (TCA cycle)
cpro00020

Module
cpro_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cpro00020]
cpro_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cpro00020]
Other DBs
GO: 0006099
Organism
Anaerotignum propionicum [GN:cpro]
Gene
CPRO_08880  leuA_1; 2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
CPRO_08870  hacA; homoaconitase large subunit [KO:K01681] [EC:4.2.1.3]
CPRO_08860  icd; isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
CPRO_10480  lpd_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CPRO_11680  pdhD_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CPRO_23370  pdhD_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CPRO_22110  lpd_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CPRO_08300  padG_1; NADH-dependent phenylglyoxylate dehydrogenase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CPRO_08310  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CPRO_08320  porC_1; pyruvate synthase subunit PorC [KO:K00177] [EC:1.2.7.3]
CPRO_08290  ndhI_1; NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [KO:K00176] [EC:1.2.7.3]
CPRO_11740  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
CPRO_13570  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
CPRO_10470  pdhC_1; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
CPRO_23380  pdhC_3; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
CPRO_22120  pdhC_2; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
CPRO_10270  padG_2; NADH-dependent phenylglyoxylate dehydrogenase subunit alpha [KO:K00169] [EC:1.2.7.1]
CPRO_10280  porB; pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
CPRO_10250  porC_2; pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
CPRO_10260  porD_1; pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
CPRO_16190  nifJ_1; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
CPRO_23920  nifJ_2; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
CPRO_29790  nifJ_3; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cpro00010  Glycolysis / Gluconeogenesis
cpro00061  Fatty acid biosynthesis
cpro00071  Fatty acid degradation
cpro00190  Oxidative phosphorylation
cpro00220  Arginine biosynthesis
cpro00250  Alanine, aspartate and glutamate metabolism
cpro00280  Valine, leucine and isoleucine degradation
cpro00350  Tyrosine metabolism
cpro00470  D-Amino acid metabolism
cpro00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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