KEGG   PATHWAY: crb00710
Entry
crb00710                    Pathway                                
Name
Carbon fixation by Calvin cycle - Capsella rubella (pink shepherd's-purse)
Class
Metabolism; Energy metabolism
Pathway map
crb00710  Carbon fixation by Calvin cycle
crb00710

Module
crb_M00165  Reductive pentose phosphate cycle (Calvin cycle) [PATH:crb00710]
crb_M00168  CAM (Crassulacean acid metabolism), dark [PATH:crb00710]
crb_M00169  CAM (Crassulacean acid metabolism), light [PATH:crb00710]
crb_M00170  C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type [PATH:crb00710]
crb_M00171  C4-dicarboxylic acid cycle, NAD - malic enzyme type [PATH:crb00710]
crb_M00172  C4-dicarboxylic acid cycle, NADP - malic enzyme type [PATH:crb00710]
Organism
Capsella rubella (pink shepherd's-purse) [GN:crb]
Gene
25194288  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
17879562  ribulose bisphosphate carboxylase small chain 3B, chloroplastic [KO:K01602] [EC:4.1.1.39]
17878197  ribulose bisphosphate carboxylase small chain 3B, chloroplastic isoform X2 [KO:K01602] [EC:4.1.1.39]
17878658  ribulose bisphosphate carboxylase small chain 3B, chloroplastic [KO:K01602] [EC:4.1.1.39]
17895103  ribulose bisphosphate carboxylase small chain 1B, chloroplastic isoform X1 [KO:K01602] [EC:4.1.1.39]
17892516  phosphoglycerate kinase 1, chloroplastic [KO:K00927] [EC:2.7.2.3]
17894949  phosphoglycerate kinase 3, cytosolic [KO:K00927] [EC:2.7.2.3]
17894806  glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic [KO:K00134] [EC:1.2.1.12]
17899687  glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [KO:K00134] [EC:1.2.1.12]
17893536  glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [KO:K00134] [EC:1.2.1.12]
17900036  glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [KO:K00134] [EC:1.2.1.12]
17885995  glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic isoform X1 [KO:K05298] [EC:1.2.1.13]
17897550  LOW QUALITY PROTEIN: glyceraldehyde-3-phosphate dehydrogenase GAPA2, chloroplastic [KO:K05298] [EC:1.2.1.13]
17898235  glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [KO:K05298] [EC:1.2.1.13]
17888660  fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
17882768  fructose-bisphosphate aldolase 4, cytosolic [KO:K01623] [EC:4.1.2.13]
17878933  fructose-bisphosphate aldolase 7, cytosolic [KO:K01623] [EC:4.1.2.13]
17886402  fructose-bisphosphate aldolase 8, cytosolic [KO:K01623] [EC:4.1.2.13]
17887009  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
17879798  fructose-bisphosphate aldolase 5, cytosolic [KO:K01623] [EC:4.1.2.13]
17879380  fructose-bisphosphate aldolase 2, chloroplastic [KO:K01623] [EC:4.1.2.13]
17889665  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
17887135  fructose-1,6-bisphosphatase 1, chloroplastic [KO:K03841] [EC:3.1.3.11]
17874985  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
17897846  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
17885909  transketolase-1, chloroplastic [KO:K00615] [EC:2.2.1.1]
17887628  transketolase-2, chloroplastic [KO:K00615] [EC:2.2.1.1]
17881536  LOW QUALITY PROTEIN: transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
17886246  sedoheptulose-1,7-bisphosphatase, chloroplastic [KO:K01100] [EC:3.1.3.37]
17884870  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
17893815  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
17894212  probable ribose-5-phosphate isomerase 1 [KO:K01807] [EC:5.3.1.6]
17877318  probable ribose-5-phosphate isomerase 4, chloroplastic [KO:K01807] [EC:5.3.1.6]
17899097  phosphoribulokinase, chloroplastic [KO:K00855] [EC:2.7.1.19]
17885978  triosephosphate isomerase, cytosolic [KO:K01803] [EC:5.3.1.1]
17887816  triosephosphate isomerase, chloroplastic [KO:K01803] [EC:5.3.1.1]
17875421  ribulose-phosphate 3-epimerase, chloroplastic [KO:K01783] [EC:5.1.3.1]
17895305  ribulose-phosphate 3-epimerase, cytoplasmic isoform [KO:K01783] [EC:5.1.3.1]
17881465  uncharacterized protein LOC17881465 [KO:K00616] [EC:2.2.1.2]
17898357  uncharacterized protein LOC17898357 [KO:K00616] [EC:2.2.1.2]
17894524  phosphoenolpyruvate carboxylase 4 [KO:K01595] [EC:4.1.1.31]
17893851  phosphoenolpyruvate carboxylase 3 [KO:K01595] [EC:4.1.1.31]
17887798  phosphoenolpyruvate carboxylase 2 [KO:K01595] [EC:4.1.1.31]
17898308  phosphoenolpyruvate carboxylase 1 [KO:K01595] [EC:4.1.1.31]
17897085  phosphoenolpyruvate carboxylase 4 isoform X1 [KO:K01595] [EC:4.1.1.31]
17882445  aspartate aminotransferase, cytoplasmic isozyme 1 [KO:K14454] [EC:2.6.1.1]
17881156  aspartate aminotransferase 3, chloroplastic [KO:K14454] [EC:2.6.1.1]
17896323  aspartate aminotransferase, cytoplasmic isozyme 2 [KO:K14454] [EC:2.6.1.1]
17877231  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
17879687  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
17894960  alanine aminotransferase 2, mitochondrial [KO:K00814] [EC:2.6.1.2]
17898997  alanine aminotransferase 1, mitochondrial [KO:K00814] [EC:2.6.1.2]
17895448  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
17897757  glutamate--glyoxylate aminotransferase 1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
17878315  pyruvate, phosphate dikinase 1, chloroplastic isoform X2 [KO:K01006] [EC:2.7.9.1]
17882467  NADP-dependent malic enzyme 2 [KO:K00029] [EC:1.1.1.40]
17882343  NADP-dependent malic enzyme 3 [KO:K00029] [EC:1.1.1.40]
17891793  NADP-dependent malic enzyme 1 [KO:K00029] [EC:1.1.1.40]
17895243  NADP-dependent malic enzyme 4, chloroplastic [KO:K00029] [EC:1.1.1.40]
17876624  malate dehydrogenase [NADP], chloroplastic isoform X2 [KO:K00051] [EC:1.1.1.82]
17888564  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
17875863  malate dehydrogenase 1, cytoplasmic [KO:K00025] [EC:1.1.1.37]
17874770  malate dehydrogenase 3, cytoplasmic [KO:K00025] [EC:1.1.1.37]
111832567  malate dehydrogenase 1, cytoplasmic [KO:K00025] [EC:1.1.1.37]
17885016  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
17893797  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
17900923  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
17888110  malate dehydrogenase 1, peroxisomal [KO:K00026] [EC:1.1.1.37]
17882677  NAD-dependent malic enzyme 2, mitochondrial [KO:K00028] [EC:1.1.1.39]
17890615  NAD-dependent malic enzyme 1, mitochondrial [KO:K00028] [EC:1.1.1.39]
Compound
C00001  H2O
C00011  CO2
C00022  Pyruvate
C00036  Oxaloacetate
C00041  L-Alanine
C00049  L-Aspartate
C00074  Phosphoenolpyruvate
C00085  D-Fructose 6-phosphate
C00111  Glycerone phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00149  (S)-Malate
C00197  3-Phospho-D-glycerate
C00199  D-Ribulose 5-phosphate
C00231  D-Xylulose 5-phosphate
C00236  3-Phospho-D-glyceroyl phosphate
C00279  D-Erythrose 4-phosphate
C00354  D-Fructose 1,6-bisphosphate
C00447  Sedoheptulose 1,7-bisphosphate
C01182  D-Ribulose 1,5-bisphosphate
C05382  Sedoheptulose 7-phosphate
Related
pathway
crb00010  Glycolysis / Gluconeogenesis
crb00400  Phenylalanine, tyrosine and tryptophan biosynthesis
crb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00710   
LinkDB

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