KEGG   PATHWAY: crx00020
Entry
crx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter rectus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
crx00020  Citrate cycle (TCA cycle)
crx00020

Module
crx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:crx00020]
crx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:crx00020]
crx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:crx00020]
Other DBs
GO: 0006099
Organism
Campylobacter rectus [GN:crx]
Gene
CRECT_0220  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CRECT_1257  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CRECT_1218  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
CRECT_1214  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CRECT_1213  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CRECT_1212  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
CRECT_1215  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
CRECT_0617  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
CRECT_0618  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
CRECT_0616  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
CRECT_1229  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CRECT_1217  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
CRECT_1424  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
CRECT_0496  pycB; pyruvate carboxylase, subunit B [KO:K01960] [EC:6.4.1.1]
CRECT_0497  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CRECT_0388  por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
crx00010  Glycolysis / Gluconeogenesis
crx00053  Ascorbate and aldarate metabolism
crx00061  Fatty acid biosynthesis
crx00071  Fatty acid degradation
crx00190  Oxidative phosphorylation
crx00220  Arginine biosynthesis
crx00250  Alanine, aspartate and glutamate metabolism
crx00280  Valine, leucine and isoleucine degradation
crx00350  Tyrosine metabolism
crx00470  D-Amino acid metabolism
crx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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