KEGG   PATHWAY: csc00020
Entry
csc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Caldicellulosiruptor saccharolyticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
csc00020  Citrate cycle (TCA cycle)
csc00020

Module
csc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:csc00020]
Other DBs
GO: 0006099
Organism
Caldicellulosiruptor saccharolyticus [GN:csc]
Gene
Csac_0746  pyruvate carboxyltransferase [KO:K05942] [EC:2.3.3.3]
Csac_0724  pyruvate carboxyltransferase [KO:K05942] [EC:2.3.3.3]
Csac_2456  pyruvate carboxyltransferase [KO:K05942] [EC:2.3.3.3]
Csac_0751  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Csac_0873  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Csac_1549  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Csac_1550  thiamine pyrophosphate enzyme domain protein TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Csac_1551  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
Csac_1548  4Fe-4S ferredoxin, iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Csac_2759  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
Csac_0738  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Csac_0274  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Csac_0872  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Csac_1460  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Csac_2248  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Csac_1461  thiamine pyrophosphate enzyme domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Csac_2249  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Csac_1458  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Csac_1459  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
csc00010  Glycolysis / Gluconeogenesis
csc00053  Ascorbate and aldarate metabolism
csc00061  Fatty acid biosynthesis
csc00190  Oxidative phosphorylation
csc00220  Arginine biosynthesis
csc00250  Alanine, aspartate and glutamate metabolism
csc00280  Valine, leucine and isoleucine degradation
csc00350  Tyrosine metabolism
csc00470  D-Amino acid metabolism
csc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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