KEGG   PATHWAY: csty00020
Entry
csty00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Stygiolobus caldivivus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
csty00020  Citrate cycle (TCA cycle)
csty00020

Module
csty_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:csty00020]
csty_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:csty00020]
csty_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:csty00020]
csty_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:csty00020]
Other DBs
GO: 0006099
Organism
Stygiolobus caldivivus [GN:csty]
Gene
KN1_17470  citrate synthase [KO:K01647] [EC:2.3.3.1]
KN1_22340  citrate synthase [KO:K01647] [EC:2.3.3.1]
KN1_21830  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
KN1_05850  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KN1_03970  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
KN1_04140  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
KN1_23580  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KN1_26850  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KN1_07340  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KN1_16060  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KN1_07350  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KN1_16050  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KN1_15260  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KN1_15250  succinate--CoA ligase [KO:K01903] [EC:6.2.1.5]
KN1_02910  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KN1_02920  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
KN1_02930  disulfide reductase [KO:K00241]
KN1_02940  hypothetical protein [KO:K18859]
KN1_04500  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KN1_22300  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KN1_02150  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
KN1_28680  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
KN1_02140  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
KN1_28690  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
KN1_02170  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
KN1_28660  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
KN1_02160  ferredoxin [KO:K00171] [EC:1.2.7.1]
KN1_28670  ferredoxin [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
csty00010  Glycolysis / Gluconeogenesis
csty00053  Ascorbate and aldarate metabolism
csty00061  Fatty acid biosynthesis
csty00071  Fatty acid degradation
csty00190  Oxidative phosphorylation
csty00220  Arginine biosynthesis
csty00250  Alanine, aspartate and glutamate metabolism
csty00280  Valine, leucine and isoleucine degradation
csty00350  Tyrosine metabolism
csty00470  D-Amino acid metabolism
csty00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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