KEGG   PATHWAY: csu00020
Entry
csu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Caldarchaeum subterraneum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
csu00020  Citrate cycle (TCA cycle)
csu00020

Module
csu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:csu00020]
csu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:csu00020]
csu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:csu00020]
csu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:csu00020]
Other DBs
GO: 0006099
Organism
Candidatus Caldarchaeum subterraneum [GN:csu]
Gene
CSUB_C0888  citrate synthase [KO:K01647] [EC:2.3.3.1]
CSUB_C1647  citrate synthase [KO:K01647] [EC:2.3.3.1]
CSUB_C0779  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CSUB_C0763  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
CSUB_C1589  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CSUB_C1635  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CSUB_C1634  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CSUB_C1040  succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
CSUB_C1039  succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
CSUB_C0764  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CSUB_C0767  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
CSUB_C0765  succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
CSUB_C0766  succinate dehydrogenase subunit [KO:K00242]
CSUB_C1614  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CSUB_C1043  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CSUB_C1350  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CSUB_C0251  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CSUB_C1590  2-oxoisovalerate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
CSUB_C1263  pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
CSUB_C0069  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
CSUB_C0742  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
CSUB_C0068  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
CSUB_C0743  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
CSUB_C0070  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
CSUB_C0740  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
CSUB_C0741  pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
csu00010  Glycolysis / Gluconeogenesis
csu00053  Ascorbate and aldarate metabolism
csu00061  Fatty acid biosynthesis
csu00071  Fatty acid degradation
csu00190  Oxidative phosphorylation
csu00220  Arginine biosynthesis
csu00250  Alanine, aspartate and glutamate metabolism
csu00280  Valine, leucine and isoleucine degradation
csu00350  Tyrosine metabolism
csu00470  D-Amino acid metabolism
csu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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