KEGG   PATHWAY: csv00630
Entry
csv00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Cucumis sativus (cucumber)
Class
Metabolism; Carbohydrate metabolism
Pathway map
csv00630  Glyoxylate and dicarboxylate metabolism
csv00630

Module
csv_M00012  Glyoxylate cycle [PATH:csv00630]
csv_M00532  Photorespiration [PATH:csv00630]
csv_M00621  Glycine cleavage system [PATH:csv00630]
Other DBs
GO: 0046487 0043648
Organism
Cucumis sativus (cucumber) [GN:csv]
Gene
101214114  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
101222352  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like isoform X2 [KO:K01895] [EC:6.2.1.1]
101203579  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
101209903  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
101214523  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
101204387  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
101221189  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
101213903  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
101214377  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
101219252  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
101207078  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
101220412  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
101209376  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
101221392  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
101217715  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
101212707  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
101214645  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
101205206  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
101214327  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
101205684  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
101215498  (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
105435392  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
101202931  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
101216662  catalase isozyme 3 [KO:K03781] [EC:1.11.1.6]
101209989  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
101220201  hydroxyphenylpyruvate reductase [KO:K15919] [EC:1.1.1.79 1.1.1.81]
101208766  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
101215497  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
101215727  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
101204237  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
101203992  glyoxylate/succinic semialdehyde reductase 2, chloroplastic isoform X1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
101209132  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
101210494  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
101209186  phosphoglycolate phosphatase 1B, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
3429289  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
101219300  RBCS; ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
101217893  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
101207975  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
101207914  glutamate--glyoxylate aminotransferase 2 isoform X1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
101220645  LOW QUALITY PROTEIN: glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
101213570  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
101214380  ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
101221473  GS1; glutamine synthetase cytosolic isozyme-like [KO:K01915] [EC:6.3.1.2]
101212441  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
101213413  glutamine synthetase nodule isozyme isoform X1 [KO:K01915] [EC:6.3.1.2]
101204471  type-1 glutamine synthetase 1 [KO:K01915] [EC:6.3.1.2]
101215515  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
101215910  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
101222345  serine hydroxymethyltransferase 2, mitochondrial [KO:K00600] [EC:2.1.2.1]
101215287  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
101212892  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
101211272  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
101222240  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
101217746  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
101209820  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
101222823  leghemoglobin reductase [KO:K00382] [EC:1.8.1.4]
101207718  dihydrolipoyl dehydrogenase, mitochondrial isoform X1 [KO:K00382] [EC:1.8.1.4]
101209306  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
101217522  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
101222346  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
101222060  D-glycerate 3-kinase, chloroplastic isoform X2 [KO:K15918] [EC:2.7.1.31]
101213516  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
101222497  formyltetrahydrofolate deformylase 1, mitochondrial [KO:K01433] [EC:3.5.1.10]
101206142  uncharacterized protein LOC101206142 isoform X2 [KO:K01455] [EC:3.5.1.49]
101220634  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
101220920  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
csv00010  Glycolysis / Gluconeogenesis
csv00020  Citrate cycle (TCA cycle)
csv00030  Pentose phosphate pathway
csv00053  Ascorbate and aldarate metabolism
csv00071  Fatty acid degradation
csv00230  Purine metabolism
csv00250  Alanine, aspartate and glutamate metabolism
csv00260  Glycine, serine and threonine metabolism
csv00620  Pyruvate metabolism
csv00710  Carbon fixation by Calvin cycle
csv00750  Vitamin B6 metabolism
csv00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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