KEGG   PATHWAY: cux00020
Entry
cux00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter upsaliensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cux00020  Citrate cycle (TCA cycle)
cux00020

Module
cux_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cux00020]
cux_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cux00020]
cux_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cux00020]
Other DBs
GO: 0006099
Organism
Campylobacter upsaliensis [GN:cux]
Gene
CUP3940_1562  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CUP3940_0777  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CUP3940_0788  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
CUP3940_0793  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CUP3940_0794  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CUP3940_0795  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
CUP3940_0792  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
CUP3940_0791  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
CUP3940_0790  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
CUP3940_1032  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
CUP3940_1031  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
CUP3940_1033  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
CUP3940_1284  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CUP3940_0789  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
CUP3940_1037  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
CUP3940_0490  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
CUP3940_0520  pycB; pyruvate carboxylase, subunit B [KO:K01960] [EC:6.4.1.1]
CUP3940_0519  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CUP3940_0100  por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cux00010  Glycolysis / Gluconeogenesis
cux00061  Fatty acid biosynthesis
cux00071  Fatty acid degradation
cux00190  Oxidative phosphorylation
cux00220  Arginine biosynthesis
cux00250  Alanine, aspartate and glutamate metabolism
cux00280  Valine, leucine and isoleucine degradation
cux00350  Tyrosine metabolism
cux00470  D-Amino acid metabolism
cux00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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