KEGG   PATHWAY: cvo00020
Entry
cvo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter volucris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cvo00020  Citrate cycle (TCA cycle)
cvo00020

Module
cvo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cvo00020]
cvo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cvo00020]
Other DBs
GO: 0006099
Organism
Campylobacter volucris [GN:cvo]
Gene
CVOL_0808  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CVOL_0807  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CVOL_0806  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
CVOL_0809  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
CVOL_0393  hypothetical protein [KO:K00241]
CVOL_0328  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
CVOL_0329  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
CVOL_0327  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
CVOL_0414  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CVOL_0810  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
CVOL_0565  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
CVOL_0524  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
CVOL_1174  pycB; pyruvate carboxylase, subunit B [KO:K01960] [EC:6.4.1.1]
CVOL_1173  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CVOL_0378  por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cvo00010  Glycolysis / Gluconeogenesis
cvo00061  Fatty acid biosynthesis
cvo00190  Oxidative phosphorylation
cvo00220  Arginine biosynthesis
cvo00250  Alanine, aspartate and glutamate metabolism
cvo00280  Valine, leucine and isoleucine degradation
cvo00350  Tyrosine metabolism
cvo00470  D-Amino acid metabolism
cvo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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