KEGG   PATHWAY: cyj00020
Entry
cyj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gloeothece verrucosa
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cyj00020  Citrate cycle (TCA cycle)
cyj00020

Module
cyj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cyj00020]
cyj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cyj00020]
cyj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cyj00020]
Other DBs
GO: 0006099
Organism
Gloeothece verrucosa [GN:cyj]
Gene
Cyan7822_2117  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Cyan7822_0752  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Cyan7822_1400  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Cyan7822_1605  isocitrate/isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
Cyan7822_1909  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Cyan7822_3783  CoA-binding domain protein [KO:K01902] [EC:6.2.1.5]
Cyan7822_3782  Succinate--CoA ligase (ADP-forming) [KO:K01903] [EC:6.2.1.5]
Cyan7822_3071  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Cyan7822_1551  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Cyan7822_1072  CoB--CoM heterodisulfide reductase [KO:K00241]
Cyan7822_2824  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Cyan7822_3004  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Cyan7822_5417  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Cyan7822_1703  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Cyan7822_2730  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Cyan7822_4864  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Cyan7822_3035  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cyj00010  Glycolysis / Gluconeogenesis
cyj00053  Ascorbate and aldarate metabolism
cyj00061  Fatty acid biosynthesis
cyj00071  Fatty acid degradation
cyj00190  Oxidative phosphorylation
cyj00220  Arginine biosynthesis
cyj00250  Alanine, aspartate and glutamate metabolism
cyj00280  Valine, leucine and isoleucine degradation
cyj00350  Tyrosine metabolism
cyj00470  D-Amino acid metabolism
cyj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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