KEGG   PATHWAY: dar00630
Entry
dar00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Dechloromonas aromatica
Class
Metabolism; Carbohydrate metabolism
Pathway map
dar00630  Glyoxylate and dicarboxylate metabolism
dar00630

Module
dar_M00012  Glyoxylate cycle [PATH:dar00630]
dar_M00621  Glycine cleavage system [PATH:dar00630]
Other DBs
GO: 0046487 0043648
Organism
Dechloromonas aromatica [GN:dar]
Gene
Daro_3098  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Daro_1629  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Daro_2708  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Daro_3101  Malate synthase A [KO:K01638] [EC:2.3.3.9]
Daro_2867  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Daro_2860  citrate synthase [KO:K01647] [EC:2.3.3.1]
Daro_2882  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Daro_3022  Thiolase [KO:K00626] [EC:2.3.1.9]
Daro_0098  Thiolase [KO:K00626] [EC:2.3.1.9]
Daro_1545  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
Daro_1609  3-oxoacyl-[acyl-carrier-protein] reductase [KO:K00023] [EC:1.1.1.36]
Daro_1610  Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
Daro_3467  MaoC-like dehydratase [KO:K17865] [EC:4.2.1.55]
Daro_4003  Acetyl-CoA carboxylase, biotin carboxylase [KO:K01965] [EC:6.4.1.3]
Daro_4004  propionyl-CoA carboxylase carboxyltransferase subunit [KO:K01966] [EC:6.4.1.3 2.1.3.15]
Daro_4006  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
Daro_3315  FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal [KO:K00104] [EC:1.1.99.14]
Daro_3314  FAD linked oxidase, N-terminal [KO:K11472] [EC:1.1.99.14]
Daro_3313  4Fe-4S ferredoxin, iron-sulfur binding:Protein of unknown function DUF224, cysteine-rich region [KO:K11473] [EC:1.1.99.14]
Daro_0523  Catalase, N-terminal [KO:K03781] [EC:1.11.1.6]
Daro_0672  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K00018] [EC:1.1.1.29]
Daro_3482  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Daro_3637  ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
Daro_0077  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Daro_3763  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Daro_0603  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Daro_2465  glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit [KO:K00281] [EC:1.4.4.2]
Daro_2463  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
Daro_2857  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Daro_0440  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Daro_2464  glycine cleavage system H protein [KO:K02437]
Daro_1809  Glycine cleavage H-protein [KO:K02437]
Daro_3317  Xylose isomerase-like TIM barrel [KO:K01816] [EC:5.3.1.22]
Daro_3340  NADP oxidoreductase, coenzyme F420-dependent:6-phosphogluconate dehydrogenase, NAD-binding protein [KO:K00042] [EC:1.1.1.60]
Daro_2118  glycerate 2-kinase [KO:K11529] [EC:2.7.1.165]
Daro_1818  formate dehydrogenase (quinone-dependent) catalytic subunit [KO:K00123] [EC:1.17.1.9]
Daro_1819  formate dehydrogenase (quinone-dependent) catalytic subunit [KO:K00123] [EC:1.17.1.9]
Daro_1817  formate dehydrogenase (quinone-dependent) iron-sulfur subunit [KO:K00124]
Daro_1816  formate dehydrogenase (quinone-dependent) cytochrome b subunit [KO:K00127]
Daro_3444  LipQ [KO:K01432] [EC:3.5.1.9]
Daro_0056  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
dar00010  Glycolysis / Gluconeogenesis
dar00020  Citrate cycle (TCA cycle)
dar00030  Pentose phosphate pathway
dar00053  Ascorbate and aldarate metabolism
dar00071  Fatty acid degradation
dar00230  Purine metabolism
dar00250  Alanine, aspartate and glutamate metabolism
dar00260  Glycine, serine and threonine metabolism
dar00620  Pyruvate metabolism
dar00710  Carbon fixation by Calvin cycle
dar00750  Vitamin B6 metabolism
dar00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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