KEGG   PATHWAY: dca00020
Entry
dca00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Desulfotomaculum nigrificans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dca00020  Citrate cycle (TCA cycle)
dca00020

Other DBs
GO: 0006099
Organism
Desulfotomaculum nigrificans [GN:dca]
Gene
Desca_1726  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Desca_0146  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Desca_0393  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Desca_1322  2-oxoglutarate synthase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Desca_2084  3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Desca_0033  2-oxoglutarate synthase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Desca_0034  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Desca_1323  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Desca_2083  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Desca_0035  Pyruvate/ketoisovalerate oxidoreductase [KO:K00177] [EC:1.2.7.3]
Desca_1324  2-oxoglutarate synthase [KO:K00177] [EC:1.2.7.3]
Desca_2082  Pyruvate/ketoisovalerate oxidoreductase [KO:K00177] [EC:1.2.7.3]
Desca_0036  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [KO:K00176] [EC:1.2.7.3]
Desca_1321  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [KO:K00176] [EC:1.2.7.3]
Desca_2085  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [KO:K00176] [EC:1.2.7.3]
Desca_1332  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Desca_1331  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Desca_1388  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
Desca_1387  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K25995] [EC:1.3.5.1 7.1.1.12]
Desca_1389  succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K25996]
Desca_1392  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
Desca_1391  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Desca_1386  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Desca_0775  alkylhydroperoxidase like protein, AhpD family [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dca00010  Glycolysis / Gluconeogenesis
dca00061  Fatty acid biosynthesis
dca00071  Fatty acid degradation
dca00190  Oxidative phosphorylation
dca00220  Arginine biosynthesis
dca00250  Alanine, aspartate and glutamate metabolism
dca00280  Valine, leucine and isoleucine degradation
dca00350  Tyrosine metabolism
dca00470  D-Amino acid metabolism
dca00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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