KEGG   PATHWAY: dcr00630
Entry
dcr00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Daucus carota (carrot)
Class
Metabolism; Carbohydrate metabolism
Pathway map
dcr00630  Glyoxylate and dicarboxylate metabolism
dcr00630

Module
dcr_M00012  Glyoxylate cycle [PATH:dcr00630]
dcr_M00621  Glycine cleavage system [PATH:dcr00630]
Other DBs
GO: 0046487 0043648
Organism
Daucus carota (carrot) [GN:dcr]
Gene
108215541  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
108223341  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
108226213  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
108219283  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
108204871  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
108196447  acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
108202452  acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
108220957  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
108199904  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
108193312  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
108192605  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
108210669  malate dehydrogenase 1, peroxisomal [KO:K00026] [EC:1.1.1.37]
108219659  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
108223687  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
108227345  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
108196463  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
108192822  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
108214738  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
108203007  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
108222720  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
108226901  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
108210032  acetyl-CoA acetyltransferase 2 [KO:K00626] [EC:2.3.1.9]
108222890  acetyl-CoA acetyltransferase 2 isoform X1 [KO:K00626] [EC:2.3.1.9]
108224323  acetyl-CoA acetyltransferase 2 [KO:K00626] [EC:2.3.1.9]
108227508  glycolate oxidase 1 isoform X1 [KO:K11517] [EC:1.1.3.15]
108223576  glycolate oxidase 1 isoform X1 [KO:K11517] [EC:1.1.3.15]
108196557  peroxisomal (S)-2-hydroxyacid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
108204104  glycolate oxidase [KO:K11517] [EC:1.1.3.15]
108214439  catalase [KO:K03781] [EC:1.11.1.6]
108216251  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
108220531  catalase isozyme 2 [KO:K03781] [EC:1.11.1.6]
108218502  catalase [KO:K03781] [EC:1.11.1.6]
108222003  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
108192997  catalase [KO:K03781] [EC:1.11.1.6]
108206715  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
108194151  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
108227532  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
108206307  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
108193041  glycerate dehydrogenase HPR, peroxisomal [KO:K15893] [EC:1.1.1.29]
108199765  phosphoglycolate phosphatase 1A, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
108202800  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
108208530  ribulose bisphosphate carboxylase small subunit 1B, chloroplastic-like isoform X1 [KO:K01602] [EC:4.1.1.39]
108208531  ribulose bisphosphate carboxylase small subunit 1B, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
108208992  ribulose bisphosphate carboxylase small subunit 1B, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
108220137  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
108224372  ribulose bisphosphate carboxylase small subunit, chloroplastic 3-like [KO:K01602] [EC:4.1.1.39]
108227310  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
108203074  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
108210226  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
108194271  glutamate--glyoxylate aminotransferase 2 isoform X1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
108202675  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
108226274  ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
108211600  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
108216208  glutamine synthetase cytosolic isozyme 1 [KO:K01915] [EC:6.3.1.2]
108200704  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
108195175  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
108199658  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
108204419  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
108209298  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
108209512  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
108219201  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
108196459  serine hydroxymethyltransferase 1, mitochondrial [KO:K00600] [EC:2.1.2.1]
108193876  uncharacterized protein LOC108193876 [KO:K00600] [EC:2.1.2.1]
108203690  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
108204590  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
108202978  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
108209764  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
108199809  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
108205046  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
108202449  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X2 [KO:K00382] [EC:1.8.1.4]
108196399  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
108207247  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
108206709  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
108206270  glycine cleavage system H protein, mitochondrial [KO:K02437]
108206455  glycine cleavage system H protein, mitochondrial [KO:K02437]
108193584  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
108227360  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
108206265  formyltetrahydrofolate deformylase 1, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
108205722  formyltetrahydrofolate deformylase 1, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
108194214  uncharacterized protein LOC108194214 [KO:K01455] [EC:3.5.1.49]
108196116  uncharacterized protein LOC108196116 isoform X1 [KO:K01455] [EC:3.5.1.49]
108228006  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
108214892  probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
dcr00010  Glycolysis / Gluconeogenesis
dcr00020  Citrate cycle (TCA cycle)
dcr00030  Pentose phosphate pathway
dcr00053  Ascorbate and aldarate metabolism
dcr00071  Fatty acid degradation
dcr00230  Purine metabolism
dcr00250  Alanine, aspartate and glutamate metabolism
dcr00260  Glycine, serine and threonine metabolism
dcr00620  Pyruvate metabolism
dcr00710  Carbon fixation by Calvin cycle
dcr00750  Vitamin B6 metabolism
dcr00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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