KEGG   PATHWAY: ddb00020
Entry
ddb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Duncaniella dubosii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ddb00020  Citrate cycle (TCA cycle)
ddb00020

Module
ddb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ddb00020]
Other DBs
GO: 0006099
Organism
Duncaniella dubosii [GN:ddb]
Gene
E7747_06390  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
E7747_08520  vorB; 3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
E7747_06385  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
E7747_08515  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
E7747_08510  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
E7747_08525  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
E7747_01785  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E7747_01790  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E7747_01780  succinate dehydrogenase cytochrome b subunit [KO:K00241]
E7747_00860  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E7747_04740  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E7747_13700  carboxylase [KO:K01960] [EC:6.4.1.1]
E7747_04735  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
E7747_14070  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ddb00010  Glycolysis / Gluconeogenesis
ddb00053  Ascorbate and aldarate metabolism
ddb00061  Fatty acid biosynthesis
ddb00071  Fatty acid degradation
ddb00190  Oxidative phosphorylation
ddb00220  Arginine biosynthesis
ddb00250  Alanine, aspartate and glutamate metabolism
ddb00280  Valine, leucine and isoleucine degradation
ddb00350  Tyrosine metabolism
ddb00470  D-Amino acid metabolism
ddb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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